Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE10602 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 23 1 NVE23392 not mapped 7.51 30.5 71.1% feature · violin
Cluster 23 2 NVE5857 not mapped 7.61 28.8 68.0% feature · violin
Cluster 23 3 NVE15608 not mapped 8.61 25.4 58.8% feature · violin
Cluster 23 4 XP_032225258.1 (NVE20732) 7.00 23.9 55.9% feature · violin
Cluster 23 5 XP_048580962.1 (NVE1216) 9.13 23.1 53.2% feature · violin
Cluster 23 6 NVE20630 not mapped 3.23 22.8 67.6% feature · violin
Cluster 23 7 NVE17138 not mapped 9.33 20.8 47.9% feature · violin
Cluster 23 8 NVE9331 not mapped 2.01 20.6 78.6% feature · violin
Cluster 23 9 XP_048584370.1 (NVE6228) 3.73 20.6 54.4% feature · violin
Cluster 23 10 NVE4299 not mapped 1.97 20.6 76.4% feature · violin
Cluster 23 11 NVE23993 not mapped 0.80 19.7 99.5% feature · violin
Cluster 23 12 NVE5009 not mapped 2.10 19.5 73.8% feature · violin
Cluster 23 13 NVE6110 not mapped 8.31 19.4 44.9% feature · violin
Cluster 23 14 NVE9443 not mapped 2.07 19.1 67.9% feature · violin
Cluster 23 15 NVE21104 not mapped 4.77 18.8 48.8% feature · violin
Cluster 23 16 NVE8767 not mapped 1.41 18.6 87.5% feature · violin
Cluster 23 17 XP_032241950.1 (NVE16580) 5.98 18.3 44.3% feature · violin
Cluster 23 18 XP_048590209.1 (NVE13106) 7.41 18.3 42.9% feature · violin
Cluster 23 19 NVE10151 not mapped 0.71 18.1 97.7% feature · violin
Cluster 23 20 NVE2822 not mapped 1.07 17.6 89.7% feature · violin
Cluster 23 21 NVE20452 not mapped 2.07 16.9 60.8% feature · violin
Cluster 23 22 NVE23274 not mapped 7.49 16.8 39.3% feature · violin
Cluster 23 23 NVE14800 not mapped 1.27 16.6 85.3% feature · violin
Cluster 23 24 NVE13189 not mapped 5.68 16.3 38.4% feature · violin
Cluster 23 25 NVE1743 not mapped 2.65 15.8 48.0% feature · violin
Cluster 23 26 NVE9787 not mapped 2.01 15.8 97.5% feature · violin
Cluster 23 27 NVE23972 not mapped 2.19 15.8 54.8% feature · violin
Cluster 23 28 NVE3143 not mapped 1.06 15.7 89.1% feature · violin
Cluster 23 29 NVE23810 not mapped 7.18 15.6 36.8% feature · violin
Cluster 23 30 NVE69 not mapped 0.81 15.4 97.7% feature · violin
Cluster 23 31 NVE16618 not mapped 6.56 15.3 35.7% feature · violin
Cluster 23 32 NVE17226 not mapped 1.35 15.3 73.9% feature · violin
Cluster 23 33 XP_001631628.1 (NVE26198) 2.54 15.2 47.3% feature · violin
Cluster 23 34 NVE12909 not mapped 1.14 15.1 83.2% feature · violin
Cluster 23 35 NVE25369 not mapped 0.71 15.0 99.2% feature · violin
Cluster 23 36 NVE4021 not mapped 0.55 14.8 99.5% feature · violin
Cluster 23 37 NVE4703 not mapped 0.90 14.5 86.4% feature · violin
Cluster 23 38 NVE13069 not mapped 6.44 14.4 33.7% feature · violin
Cluster 23 39 NVE10602 not mapped 0.62 14.3 98.6% feature · violin
Cluster 23 40 NVE19531 not mapped 2.18 14.0 49.3% feature · violin
Cluster 23 41 NVE379 not mapped 0.72 13.8 97.3% feature · violin
Cluster 23 42 NVE16548 not mapped 8.02 13.7 31.7% feature · violin
Cluster 23 43 XP_001628997.1 (NVE4890) 0.51 13.7 98.6% feature · violin
Cluster 23 44 XP_032233771.2 (NVE3705) 1.62 13.7 59.1% feature · violin
Cluster 23 45 NVE11676 not mapped 1.14 13.3 74.3% feature · violin
Cluster 23 46 NVE21507 not mapped 0.48 13.2 98.4% feature · violin
Cluster 23 47 NVE7504 not mapped 7.58 13.0 30.1% feature · violin
Cluster 23 48 NVE3754 not mapped 2.48 12.9 39.3% feature · violin
Cluster 23 49 NVE9071 not mapped 6.70 12.7 30.1% feature · violin
Cluster 23 50 NVE19369 not mapped 1.56 12.7 55.7% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 42 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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