Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE10899 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 21 1 NVE24203 not mapped 6.06 19.2 83.0% feature · violin
Cluster 21 2 NVE10899 not mapped 6.66 18.8 79.5% feature · violin
Cluster 21 3 NVE14933 not mapped 5.93 17.9 76.5% feature · violin
Cluster 21 4 NVE2876 not mapped 4.15 17.5 88.0% feature · violin
Cluster 21 5 NVE13278 not mapped 4.50 14.8 67.5% feature · violin
Cluster 21 6 XP_032223455.2 (NVE226) 8.46 14.6 60.5% feature · violin
Cluster 21 7 XP_001638669.2 (NVE8332) 7.83 13.5 56.0% feature · violin
Cluster 21 8 NVE5400 not mapped 2.02 13.4 90.0% feature · violin
Cluster 21 9 NVE8199 not mapped 4.55 13.4 60.5% feature · violin
Cluster 21 10 NVE9787 not mapped 2.68 13.3 98.5% feature · violin
Cluster 21 11 NVE7860 not mapped 5.32 13.0 56.0% feature · violin
Cluster 21 12 NVE9425 not mapped 7.90 12.9 53.5% feature · violin
Cluster 21 13 NVE8066 not mapped 6.30 12.6 53.5% feature · violin
Cluster 21 14 NVE8130 not mapped 8.08 12.2 50.5% feature · violin
Cluster 21 15 NVE8429 not mapped 0.87 11.8 98.0% feature · violin
Cluster 21 16 NVE17327 not mapped 7.64 11.6 48.0% feature · violin
Cluster 21 17 NVE25571 not mapped 2.53 11.5 70.5% feature · violin
Cluster 21 18 NVE25207 not mapped 6.58 11.2 46.5% feature · violin
Cluster 21 19 NVE2514 not mapped 4.69 10.7 47.0% feature · violin
Cluster 21 20 NVE2897 not mapped 4.46 10.7 47.5% feature · violin
Cluster 21 21 NVE10788 not mapped 3.27 10.6 53.0% feature · violin
Cluster 21 22 XP_032220141.1 (NVE4682) 4.24 10.5 47.5% feature · violin
Cluster 21 23 NVE6335 not mapped 2.02 10.5 69.0% feature · violin
Cluster 21 24 XP_048587879.1 (NVE24488) 3.79 10.4 49.5% feature · violin
Cluster 21 25 NVE3894 not mapped 3.03 10.0 51.0% feature · violin
Cluster 21 26 XP_001633226.2 (NVE23271) 2.25 9.9 61.0% feature · violin
Cluster 21 27 NVE11166 not mapped 2.53 9.8 56.0% feature · violin
Cluster 21 28 NVE2833 not mapped 5.61 9.8 41.5% feature · violin
Cluster 21 29 NVE429 not mapped 3.77 9.8 45.0% feature · violin
Cluster 21 30 NVE9571 not mapped 2.85 9.7 51.5% feature · violin
Cluster 21 31 NVE25645 not mapped 8.98 9.6 39.5% feature · violin
Cluster 21 32 NVE691 not mapped 4.75 9.6 42.0% feature · violin
Cluster 21 33 NVE18938 not mapped 8.28 9.6 39.5% feature · violin
Cluster 21 34 XP_048586647.1 (NVE24995) 6.25 9.3 39.0% feature · violin
Cluster 21 35 NVE15894 not mapped 2.11 9.3 60.0% feature · violin
Cluster 21 36 NVE8149 not mapped 4.75 9.2 40.0% feature · violin
Cluster 21 37 NVE23813 not mapped 1.28 9.2 93.5% feature · violin
Cluster 21 38 NVE3445 not mapped 1.56 9.2 76.5% feature · violin
Cluster 21 39 NVE814 not mapped 3.10 9.1 46.5% feature · violin
Cluster 21 40 NVE23181 not mapped 1.69 9.0 85.0% feature · violin
Cluster 21 41 NVE8165 not mapped 8.25 9.0 37.0% feature · violin
Cluster 21 42 NVE3723 not mapped 10.50 8.9 36.5% feature · violin
Cluster 21 43 NVE7359 not mapped 2.66 8.9 49.0% feature · violin
Cluster 21 44 NVE6457 not mapped 4.45 8.8 39.0% feature · violin
Cluster 21 45 XP_001640041.1 (NVE266) 3.22 8.8 43.0% feature · violin
Cluster 21 46 NVE8534 not mapped 3.73 8.7 40.0% feature · violin
Cluster 21 47 NVE11067 not mapped 2.69 8.7 47.5% feature · violin
Cluster 21 48 NVE20412 not mapped 1.29 8.7 86.0% feature · violin
Cluster 21 49 NVE20089 not mapped 1.46 8.6 74.0% feature · violin
Cluster 21 50 XP_001641040.2 (NVE19143) 7.69 8.6 35.5% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 42 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

TOP