Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE11443 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 15 1 XP_032222624.1 (NVE16373) 5.35 61.4 90.1% feature · violin
Cluster 15 2 NVE12346 not mapped 5.07 57.5 85.0% feature · violin
Cluster 15 3 NVE8014 not mapped 6.88 56.6 79.0% feature · violin
Cluster 15 4 NVE11443 not mapped 6.38 54.5 77.0% feature · violin
Cluster 15 5 XP_032242838.2 (NVE14268) 5.52 53.4 76.2% feature · violin
Cluster 15 6 NVE9490 not mapped 3.65 52.3 95.0% feature · violin
Cluster 15 7 XP_048584944.1 (NVE19282) 1.96 51.3 98.6% feature · violin
Cluster 15 8 NVE14554 not mapped 7.26 51.1 70.6% feature · violin
Cluster 15 9 NVE19736 not mapped 4.72 50.3 73.9% feature · violin
Cluster 15 10 NVE20091 not mapped 4.40 48.5 72.4% feature · violin
Cluster 15 11 NVE15194 not mapped 2.42 47.4 99.6% feature · violin
Cluster 15 12 NVE6393 not mapped 3.13 47.3 85.6% feature · violin
Cluster 15 13 NVE15668 not mapped 1.62 47.2 98.8% feature · violin
Cluster 15 14 NVE19743 not mapped 3.73 46.9 79.5% feature · violin
Cluster 15 15 NVE5223 not mapped 3.75 46.1 83.4% feature · violin
Cluster 15 16 NVE23575 not mapped 3.44 45.9 76.0% feature · violin
Cluster 15 17 XP_001640083.2 (NVE339) 2.04 45.9 95.1% feature · violin
Cluster 15 18 NVE14419 not mapped 3.18 45.3 77.9% feature · violin
Cluster 15 19 NVE21004 not mapped 2.70 45.2 86.6% feature · violin
Cluster 15 20 NVE12519 not mapped 2.77 45.0 87.1% feature · violin
Cluster 15 21 NVE3935 not mapped 2.86 44.6 87.4% feature · violin
Cluster 15 22 NVE5003 not mapped 2.91 44.5 85.9% feature · violin
Cluster 15 23 NVE11962 not mapped 2.81 44.4 86.5% feature · violin
Cluster 15 24 XP_001635734.2 (NVE17817) 3.32 43.9 78.4% feature · violin
Cluster 15 25 NVE3064 not mapped 2.69 43.4 84.6% feature · violin
Cluster 15 26 NVE23456 not mapped 3.17 43.3 84.9% feature · violin
Cluster 15 27 NVE17311 not mapped 2.64 43.1 84.5% feature · violin
Cluster 15 28 NVE19943 not mapped 2.66 42.9 84.1% feature · violin
Cluster 15 29 NVE2273 not mapped 3.38 42.7 72.9% feature · violin
Cluster 15 30 NVE23841 not mapped 3.14 42.3 75.2% feature · violin
Cluster 15 31 NVE16345 not mapped 2.77 42.1 79.6% feature · violin
Cluster 15 32 NVE10060 not mapped 2.84 42.1 79.6% feature · violin
Cluster 15 33 NVE23005 not mapped 2.95 42.0 73.5% feature · violin
Cluster 15 34 NVE7441 not mapped 2.36 41.3 85.3% feature · violin
Cluster 15 35 XP_001640436.1 (NVE23956) 3.31 41.3 72.6% feature · violin
Cluster 15 36 NVE13155 not mapped 2.76 41.2 78.3% feature · violin
Cluster 15 37 XP_032237610.1 (NVE24472) 3.18 41.1 70.7% feature · violin
Cluster 15 38 NVE21175 not mapped 2.42 40.8 84.9% feature · violin
Cluster 15 39 NVE25544 not mapped 2.58 40.6 83.9% feature · violin
Cluster 15 40 NVE16891 not mapped 2.29 40.4 84.1% feature · violin
Cluster 15 41 NVE23052 not mapped 1.51 40.3 94.3% feature · violin
Cluster 15 42 NVE1245 not mapped 2.43 40.2 81.4% feature · violin
Cluster 15 43 NVE3078 not mapped 1.97 40.0 89.6% feature · violin
Cluster 15 44 NVE11230 not mapped 2.47 39.6 79.1% feature · violin
Cluster 15 45 NVE17936 not mapped 3.10 39.4 66.7% feature · violin
Cluster 15 46 NVE20401 not mapped 2.29 39.3 84.3% feature · violin
Cluster 15 47 XP_048588824.1 (NVE18224) 2.35 39.2 79.0% feature · violin
Cluster 15 48 NVE23303 not mapped 3.36 39.2 66.3% feature · violin
Cluster 15 49 NVE8463 not mapped 2.43 39.0 80.6% feature · violin
Cluster 15 50 NVE170 not mapped 5.16 38.9 55.3% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 42 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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