Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE12138 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 16 1 NVE8163 not mapped 10.52 59.8 97.5% feature · violin
Cluster 16 2 NVE14917 not mapped 9.99 56.9 93.0% feature · violin
Cluster 16 3 NVE5901 not mapped 9.99 56.5 92.1% feature · violin
Cluster 16 4 NVE25858 not mapped 9.87 56.5 92.1% feature · violin
Cluster 16 5 NVE16867 not mapped 9.65 51.9 84.8% feature · violin
Cluster 16 6 NVE2435 not mapped 5.29 48.3 83.3% feature · violin
Cluster 16 7 NVE23913 not mapped 9.40 43.0 70.3% feature · violin
Cluster 16 8 NVE6677 not mapped 4.54 42.9 79.5% feature · violin
Cluster 16 9 NVE11879 not mapped 8.55 42.4 69.4% feature · violin
Cluster 16 10 NVE2906 not mapped 9.37 40.9 66.7% feature · violin
Cluster 16 11 NVE20798 not mapped 9.38 40.2 65.5% feature · violin
Cluster 16 12 NVE21972 not mapped 2.47 39.3 90.1% feature · violin
Cluster 16 13 XP_032238340.2 (NVE23327) 5.98 36.0 62.6% feature · violin
Cluster 16 14 NVE21713 not mapped 6.25 35.9 61.4% feature · violin
Cluster 16 15 NVE1227 not mapped 4.20 35.3 64.2% feature · violin
Cluster 16 16 NVE10806 not mapped 5.77 34.2 57.5% feature · violin
Cluster 16 17 NVE7805 not mapped 7.10 33.9 55.8% feature · violin
Cluster 16 18 NVE4175 not mapped 8.60 33.5 54.7% feature · violin
Cluster 16 19 NVE8404 not mapped 8.20 32.3 52.7% feature · violin
Cluster 16 20 NVE16604 not mapped 1.80 32.0 86.1% feature · violin
Cluster 16 21 NVE3852 not mapped 5.22 32.0 54.9% feature · violin
Cluster 16 22 NVE4418 not mapped 8.39 31.5 51.3% feature · violin
Cluster 16 23 NVE14800 not mapped 1.69 31.4 91.1% feature · violin
Cluster 16 24 NVE19339 not mapped 3.47 30.3 58.4% feature · violin
Cluster 16 25 NVE16872 not mapped 9.57 30.0 48.9% feature · violin
Cluster 16 26 NVE23932 not mapped 6.91 30.0 49.9% feature · violin
Cluster 16 27 NVE22528 not mapped 3.14 29.7 60.0% feature · violin
Cluster 16 28 NVE21881 not mapped 4.16 29.6 55.1% feature · violin
Cluster 16 29 NVE20452 not mapped 2.63 29.3 65.9% feature · violin
Cluster 16 30 NVE12138 not mapped 3.98 29.3 53.7% feature · violin
Cluster 16 31 NVE4616 not mapped 7.67 29.2 47.7% feature · violin
Cluster 16 32 NVE8767 not mapped 1.59 28.7 88.5% feature · violin
Cluster 16 33 NVE25497 not mapped 6.15 28.6 47.6% feature · violin
Cluster 16 34 NVE2222 not mapped 8.19 28.1 46.0% feature · violin
Cluster 16 35 NVE23972 not mapped 2.85 28.0 61.4% feature · violin
Cluster 16 36 NVE9110 not mapped 3.75 27.7 51.1% feature · violin
Cluster 16 37 NVE10151 not mapped 0.82 27.5 98.6% feature · violin
Cluster 16 38 NVE3061 not mapped 1.81 26.5 78.0% feature · violin
Cluster 16 39 NVE11295 not mapped 5.49 26.5 44.8% feature · violin
Cluster 16 40 NVE17226 not mapped 1.58 25.7 79.5% feature · violin
Cluster 16 41 NVE12945 not mapped 4.20 25.6 46.1% feature · violin
Cluster 16 42 NVE24125 not mapped 2.71 25.5 54.9% feature · violin
Cluster 16 43 NVE26192 not mapped 2.02 25.3 71.5% feature · violin
Cluster 16 44 NVE20609 not mapped 2.24 24.9 61.0% feature · violin
Cluster 16 45 NVE18910 not mapped 6.18 24.9 41.4% feature · violin
Cluster 16 46 NVE5222 not mapped 4.89 24.9 42.9% feature · violin
Cluster 16 47 NVE3445 not mapped 1.67 24.8 77.5% feature · violin
Cluster 16 48 NVE20152 not mapped 9.49 24.8 40.3% feature · violin
Cluster 16 49 NVE4617 not mapped 3.22 24.8 49.6% feature · violin
Cluster 16 50 NVE16339 not mapped 3.40 24.5 47.8% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 49 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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