Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE12374 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 17 1 NVE6010 not mapped 4.99 85.4 97.0% feature · violin
Cluster 17 2 NVE4448 not mapped 6.08 85.0 93.8% feature · violin
Cluster 17 3 NVE17843 not mapped 6.24 83.8 92.3% feature · violin
Cluster 17 4 NVE8266 not mapped 6.19 82.8 91.4% feature · violin
Cluster 17 5 NVE20813 not mapped 5.62 78.2 86.3% feature · violin
Cluster 17 6 NVE17842 not mapped 5.22 74.7 85.1% feature · violin
Cluster 17 7 XP_048578359.1 (NVE17845) 4.97 66.1 74.5% feature · violin
Cluster 17 8 NVE25792 not mapped 3.34 65.7 85.5% feature · violin
Cluster 17 9 XP_048589383.1 (NVE5412) 4.32 59.1 68.1% feature · violin
Cluster 17 10 NVE7724 not mapped 4.10 54.7 74.9% feature · violin
Cluster 17 11 NVE12374 not mapped 3.80 50.5 59.8% feature · violin
Cluster 17 12 NVE726 not mapped 3.05 49.4 64.7% feature · violin
Cluster 17 13 NVE14871 not mapped 2.22 48.1 81.0% feature · violin
Cluster 17 14 NVE16306 not mapped 3.02 45.6 61.8% feature · violin
Cluster 17 15 NVE25082 not mapped 1.82 44.1 79.1% feature · violin
Cluster 17 16 NVE20337 not mapped 3.20 44.0 55.9% feature · violin
Cluster 17 17 NVE17217 not mapped 3.04 43.2 55.8% feature · violin
Cluster 17 18 NVE13022 not mapped 2.64 43.1 59.9% feature · violin
Cluster 17 19 XP_048584704.1 (NVE4331) 3.24 43.0 54.1% feature · violin
Cluster 17 20 NVE13456 not mapped 1.91 41.4 75.7% feature · violin
Cluster 17 21 XP_048583165.1 (NVE8547) 2.33 41.2 61.4% feature · violin
Cluster 17 22 XP_001638052.2 (NVE10817) 3.37 40.6 50.9% feature · violin
Cluster 17 23 NVE3113 not mapped 3.12 40.4 52.1% feature · violin
Cluster 17 24 NVE23456 not mapped 2.42 38.5 63.0% feature · violin
Cluster 17 25 NVE13841 not mapped 2.94 36.5 47.0% feature · violin
Cluster 17 26 NVE22972 not mapped 3.09 35.4 45.1% feature · violin
Cluster 17 27 NVE8333 not mapped 1.95 34.9 57.3% feature · violin
Cluster 17 28 NVE17194 not mapped 3.23 34.9 42.1% feature · violin
Cluster 17 29 NVE16307 not mapped 1.88 34.9 59.3% feature · violin
Cluster 17 30 NVE22048 not mapped 0.69 34.8 98.7% feature · violin
Cluster 17 31 NVE19817 not mapped 0.74 34.3 95.6% feature · violin
Cluster 17 32 NVE21578 not mapped 0.57 34.1 98.6% feature · violin
Cluster 17 33 NVE8785 not mapped 3.66 34.0 39.3% feature · violin
Cluster 17 34 NVE9447 not mapped 3.16 33.6 41.8% feature · violin
Cluster 17 35 NVE24745 not mapped 0.77 33.4 96.4% feature · violin
Cluster 17 36 NVE7931 not mapped 3.84 33.2 39.2% feature · violin
Cluster 17 37 NVE12879 not mapped 0.62 32.9 98.9% feature · violin
Cluster 17 38 NVE1333 not mapped 0.79 32.7 94.7% feature · violin
Cluster 17 39 NVE6308 not mapped 2.75 32.2 42.2% feature · violin
Cluster 17 40 NVE10816 not mapped 1.58 32.2 62.6% feature · violin
Cluster 17 41 NVE10968 not mapped 1.49 32.1 69.1% feature · violin
Cluster 17 42 NVE1638 not mapped 0.62 31.7 96.9% feature · violin
Cluster 17 43 NVE1903 not mapped 2.97 31.5 46.0% feature · violin
Cluster 17 44 NVE6360 not mapped 3.24 31.3 38.3% feature · violin
Cluster 17 45 NVE379 not mapped 0.73 31.2 97.2% feature · violin
Cluster 17 46 NVE11079 not mapped 1.93 30.8 52.6% feature · violin
Cluster 17 47 NVE414 not mapped 0.79 30.1 92.7% feature · violin
Cluster 17 48 NVE13758 not mapped 2.58 29.6 47.6% feature · violin
Cluster 17 49 NVE12051 not mapped 0.41 29.6 99.9% feature · violin
Cluster 17 50 NVE10463 not mapped 1.84 29.6 50.7% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 45 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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