Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE12981 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 22 1 NVE25570 not mapped 2.05 45.3 99.5% feature · violin
Cluster 22 2 NVE4959 not mapped 8.55 43.7 78.1% feature · violin
Cluster 22 3 NVE7082 not mapped 8.47 43.3 77.5% feature · violin
Cluster 22 4 NVE1494 not mapped 9.87 43.2 76.6% feature · violin
Cluster 22 5 NVE10898 not mapped 7.43 40.4 73.0% feature · violin
Cluster 22 6 NVE11820 not mapped 6.61 40.4 73.5% feature · violin
Cluster 22 7 NVE47 not mapped 8.26 40.3 72.2% feature · violin
Cluster 22 8 NVE11748 not mapped 7.67 37.9 68.1% feature · violin
Cluster 22 9 NVE3357 not mapped 5.86 36.5 67.6% feature · violin
Cluster 22 10 NVE24914 not mapped 3.20 36.4 78.6% feature · violin
Cluster 22 11 NVE265 not mapped 9.37 36.3 64.5% feature · violin
Cluster 22 12 NVE1605 not mapped 9.36 34.8 61.8% feature · violin
Cluster 22 13 NVE23019 not mapped 4.04 32.4 66.5% feature · violin
Cluster 22 14 NVE2514 not mapped 6.64 32.3 58.5% feature · violin
Cluster 22 15 NVE19483 not mapped 7.21 32.2 57.8% feature · violin
Cluster 22 16 NVE3093 not mapped 4.32 32.0 62.9% feature · violin
Cluster 22 17 XP_001625293.3 (NVE12063) 5.74 31.9 58.6% feature · violin
Cluster 22 18 NVE20107 not mapped 4.75 30.9 59.2% feature · violin
Cluster 22 19 NVE14303 not mapped 2.89 30.6 70.1% feature · violin
Cluster 22 20 NVE24215 not mapped 6.13 29.5 53.8% feature · violin
Cluster 22 21 NVE25571 not mapped 2.82 29.4 72.1% feature · violin
Cluster 22 22 NVE19 not mapped 3.81 28.9 60.1% feature · violin
Cluster 22 23 NVE13244 not mapped 4.48 28.7 55.5% feature · violin
Cluster 22 24 NVE5442 not mapped 4.67 28.4 55.3% feature · violin
Cluster 22 25 NVE21804 not mapped 5.67 28.4 52.2% feature · violin
Cluster 22 26 XP_001633226.2 (NVE23271) 2.96 28.4 65.6% feature · violin
Cluster 22 27 XP_048586119.1 (NVE5133) 8.96 28.3 50.2% feature · violin
Cluster 22 28 XP_032236265.1 (NVE426) 8.06 28.2 50.3% feature · violin
Cluster 22 29 NVE8763 not mapped 3.90 27.8 56.1% feature · violin
Cluster 22 30 NVE12981 not mapped 4.15 27.4 54.2% feature · violin
Cluster 22 31 NVE16072 not mapped 8.38 27.4 48.8% feature · violin
Cluster 22 32 XP_048586246.1 (NVE14741) 3.57 27.2 57.3% feature · violin
Cluster 22 33 NVE18817 not mapped 6.78 26.9 48.3% feature · violin
Cluster 22 34 NVE5471 not mapped 4.52 26.5 51.1% feature · violin
Cluster 22 35 NVE8270 not mapped 1.78 26.4 89.1% feature · violin
Cluster 22 36 NVE6868 not mapped 4.71 26.4 50.4% feature · violin
Cluster 22 37 NVE22513 not mapped 8.79 26.3 46.7% feature · violin
Cluster 22 38 NVE10791 not mapped 2.52 26.1 67.3% feature · violin
Cluster 22 39 NVE14933 not mapped 5.18 26.0 49.0% feature · violin
Cluster 22 40 NVE8088 not mapped 7.32 25.9 46.3% feature · violin
Cluster 22 41 NVE22714 not mapped 9.29 25.9 45.9% feature · violin
Cluster 22 42 NVE11310 not mapped 10.28 25.8 45.6% feature · violin
Cluster 22 43 NVE21040 not mapped 7.12 25.7 46.0% feature · violin
Cluster 22 44 NVE1495 not mapped 8.36 25.6 45.6% feature · violin
Cluster 22 45 NVE1277 not mapped 7.70 25.6 45.8% feature · violin
Cluster 22 46 NVE17084 not mapped 2.22 25.6 81.5% feature · violin
Cluster 22 47 NVE15276 not mapped 1.50 25.2 81.4% feature · violin
Cluster 22 48 NVE16074 not mapped 6.14 25.0 45.6% feature · violin
Cluster 22 49 NVE7447 not mapped 6.28 24.9 45.3% feature · violin
Cluster 22 50 NVE23852 not mapped 8.12 24.8 44.2% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 45 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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