Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE13257 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 3 1 NVE1939 not mapped 2.45 89.0 99.4% feature · violin
Cluster 3 2 NVE23457 not mapped 4.68 85.9 73.3% feature · violin
Cluster 3 3 NVE9787 not mapped 3.35 85.9 98.8% feature · violin
Cluster 3 4 XP_032237477.1 (NVE24738) 3.30 80.0 87.3% feature · violin
Cluster 3 5 NVE19335 not mapped 5.57 78.1 63.3% feature · violin
Cluster 3 6 NVE10021 not mapped 5.17 78.0 64.3% feature · violin
Cluster 3 7 NVE18456 not mapped 3.09 73.1 84.3% feature · violin
Cluster 3 8 NVE2870 not mapped 3.30 72.7 77.1% feature · violin
Cluster 3 9 NVE6890 not mapped 3.08 72.2 79.2% feature · violin
Cluster 3 10 NVE15943 not mapped 2.94 72.0 91.2% feature · violin
Cluster 3 11 NVE23145 not mapped 2.81 70.9 94.7% feature · violin
Cluster 3 12 NVE14362 not mapped 2.65 64.1 83.2% feature · violin
Cluster 3 13 NVE18593 not mapped 3.76 63.6 60.8% feature · violin
Cluster 3 14 NVE7853 not mapped 1.92 63.5 79.6% feature · violin
Cluster 3 15 NVE23813 not mapped 1.58 62.7 92.6% feature · violin
Cluster 3 16 NVE23181 not mapped 2.21 61.7 83.3% feature · violin
Cluster 3 17 NVE13257 not mapped 1.57 61.7 95.6% feature · violin
Cluster 3 18 XP_048588459.1 (NVE448) 2.01 61.1 89.2% feature · violin
Cluster 3 19 NVE12092 not mapped 2.17 60.3 75.6% feature · violin
Cluster 3 20 XP_001634238.1 (NVE21257) 1.66 58.3 79.6% feature · violin
Cluster 3 21 NVE21090 not mapped 1.90 57.3 88.2% feature · violin
Cluster 3 22 NVE12842 not mapped 2.48 57.2 81.7% feature · violin
Cluster 3 23 NVE21409 not mapped 2.00 56.4 82.0% feature · violin
Cluster 3 24 NVE1907 not mapped 1.67 55.7 88.9% feature · violin
Cluster 3 25 NVE2618 not mapped 1.35 54.7 94.5% feature · violin
Cluster 3 26 NVE21133 not mapped 2.03 52.6 71.4% feature · violin
Cluster 3 27 NVE5385 not mapped 0.65 52.2 96.5% feature · violin
Cluster 3 28 NVE230 not mapped 1.45 50.8 78.4% feature · violin
Cluster 3 29 XP_032238357.2 (NVE23143) 0.99 50.5 99.4% feature · violin
Cluster 3 30 NVE10019 not mapped 1.55 49.0 76.1% feature · violin
Cluster 3 31 XP_032236866.1 (NVE25536) 1.67 47.8 73.3% feature · violin
Cluster 3 32 NVE15969 not mapped 1.93 47.0 64.7% feature · violin
Cluster 3 33 NVE10283 not mapped 2.29 46.4 61.5% feature · violin
Cluster 3 34 NVE24545 not mapped 1.70 46.4 78.6% feature · violin
Cluster 3 35 XP_032241044.1 (NVE18272) 1.56 45.6 77.4% feature · violin
Cluster 3 36 NVE8861 not mapped 2.99 45.2 44.5% feature · violin
Cluster 3 37 NVE8429 not mapped 0.68 44.7 98.2% feature · violin
Cluster 3 38 NVE15538 not mapped 1.29 44.2 79.7% feature · violin
Cluster 3 39 XP_048583218.1 (NVE20507) 2.76 43.4 44.4% feature · violin
Cluster 3 40 XP_001639319.1 (NVE3785) 1.01 43.2 84.7% feature · violin
Cluster 3 41 NVE17574 not mapped 1.33 42.1 70.0% feature · violin
Cluster 3 42 NVE7039 not mapped 1.60 40.6 60.9% feature · violin
Cluster 3 43 NVE13346 not mapped 0.79 40.0 98.1% feature · violin
Cluster 3 44 NVE13315 not mapped 0.95 39.6 77.8% feature · violin
Cluster 3 45 NVE15435 not mapped 1.88 39.4 62.1% feature · violin
Cluster 3 46 XP_032222519.2 (NVE16297) 1.51 38.7 70.2% feature · violin
Cluster 3 47 NVE4770 not mapped 4.31 38.6 32.4% feature · violin
Cluster 3 48 NVE589 not mapped 1.75 37.7 53.8% feature · violin
Cluster 3 49 NVE8034 not mapped 2.07 37.1 44.4% feature · violin
Cluster 3 50 NVE23818 not mapped 0.99 36.7 73.3% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 41 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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