Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE13417 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 4 1 NVE11822 not mapped 5.09 76.9 92.2% feature · violin
Cluster 4 2 NVE9490 not mapped 3.97 70.2 98.5% feature · violin
Cluster 4 3 XP_001635734.2 (NVE17817) 4.31 68.8 87.9% feature · violin
Cluster 4 4 NVE5541 not mapped 4.72 64.7 77.1% feature · violin
Cluster 4 5 NVE9767 not mapped 4.09 63.5 81.4% feature · violin
Cluster 4 6 NVE26039 not mapped 4.82 61.9 73.0% feature · violin
Cluster 4 7 NVE24801 not mapped 4.61 60.2 71.6% feature · violin
Cluster 4 8 XP_032232859.1 (NVE5207) 4.14 59.9 75.5% feature · violin
Cluster 4 9 NVE18090 not mapped 4.80 59.6 70.1% feature · violin
Cluster 4 10 NVE16447 not mapped 3.91 58.5 85.5% feature · violin
Cluster 4 11 NVE3288 not mapped 4.54 58.5 70.1% feature · violin
Cluster 4 12 NVE15668 not mapped 1.48 55.6 98.7% feature · violin
Cluster 4 13 NVE23841 not mapped 3.40 54.0 73.9% feature · violin
Cluster 4 14 NVE19926 not mapped 3.65 53.7 70.1% feature · violin
Cluster 4 15 NVE26040 not mapped 4.41 53.5 63.8% feature · violin
Cluster 4 16 NVE7848 not mapped 3.78 50.9 64.1% feature · violin
Cluster 4 17 NVE17668 not mapped 3.18 49.9 66.7% feature · violin
Cluster 4 18 NVE24388 not mapped 3.38 48.8 63.2% feature · violin
Cluster 4 19 NVE11062 not mapped 3.55 48.8 62.0% feature · violin
Cluster 4 20 XP_048584944.1 (NVE19282) 1.52 48.5 97.8% feature · violin
Cluster 4 21 NVE3880 not mapped 3.60 47.8 63.9% feature · violin
Cluster 4 22 NVE13183 not mapped 4.23 47.5 56.8% feature · violin
Cluster 4 23 NVE8270 not mapped 1.68 47.4 98.1% feature · violin
Cluster 4 24 NVE11722 not mapped 3.95 47.3 57.7% feature · violin
Cluster 4 25 NVE17311 not mapped 2.37 47.1 81.8% feature · violin
Cluster 4 26 NVE1706 not mapped 2.30 47.1 82.9% feature · violin
Cluster 4 27 NVE14914 not mapped 2.62 47.0 70.7% feature · violin
Cluster 4 28 NVE22407 not mapped 2.33 47.0 85.0% feature · violin
Cluster 4 29 NVE18548 not mapped 1.99 46.6 88.3% feature · violin
Cluster 4 30 NVE13417 not mapped 3.12 46.5 62.0% feature · violin
Cluster 4 31 NVE5003 not mapped 2.52 46.5 79.0% feature · violin
Cluster 4 32 NVE21004 not mapped 2.28 46.3 83.0% feature · violin
Cluster 4 33 NVE7650 not mapped 3.93 46.1 56.3% feature · violin
Cluster 4 34 NVE11962 not mapped 2.40 46.0 80.0% feature · violin
Cluster 4 35 NVE23052 not mapped 1.45 45.8 95.2% feature · violin
Cluster 4 36 NVE3064 not mapped 2.33 45.6 78.7% feature · violin
Cluster 4 37 XP_001630130.1 (NVE2702) 2.08 45.4 88.4% feature · violin
Cluster 4 38 NVE6021 not mapped 2.67 45.3 72.5% feature · violin
Cluster 4 39 NVE23456 not mapped 2.78 45.3 75.4% feature · violin
Cluster 4 40 NVE20644 not mapped 2.37 45.1 72.5% feature · violin
Cluster 4 41 NVE8638 not mapped 2.31 44.6 79.2% feature · violin
Cluster 4 42 NVE25544 not mapped 2.34 44.5 77.2% feature · violin
Cluster 4 43 NVE5001 not mapped 2.28 44.5 73.8% feature · violin
Cluster 4 44 NVE7441 not mapped 2.09 44.0 81.8% feature · violin
Cluster 4 45 NVE2730 not mapped 2.95 43.6 59.2% feature · violin
Cluster 4 46 NVE22651 not mapped 2.44 43.5 73.1% feature · violin
Cluster 4 47 NVE10060 not mapped 2.37 43.2 73.2% feature · violin
Cluster 4 48 NVE18993 not mapped 2.18 43.2 76.1% feature · violin
Cluster 4 49 NVE16345 not mapped 2.36 43.1 71.9% feature · violin
Cluster 4 50 NVE25556 not mapped 4.03 43.0 52.3% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 46 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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