Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE13685 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 25 1 NVE13685 not mapped 10.81 37.3 99.6% feature · violin
Cluster 25 2 NVE6210 not mapped 10.79 32.5 86.7% feature · violin
Cluster 25 3 NVE6993 not mapped 9.32 30.6 82.7% feature · violin
Cluster 25 4 NVE18256 not mapped 9.79 29.8 79.8% feature · violin
Cluster 25 5 NVE14456 not mapped 9.23 29.0 77.7% feature · violin
Cluster 25 6 NVE16591 not mapped 7.07 28.5 78.1% feature · violin
Cluster 25 7 XP_048578883.1 (NVE17839) 6.50 26.2 72.4% feature · violin
Cluster 25 8 NVE21815 not mapped 9.11 25.2 67.6% feature · violin
Cluster 25 9 NVE18257 not mapped 9.20 24.0 64.2% feature · violin
Cluster 25 10 NVE7065 not mapped 8.18 24.0 64.4% feature · violin
Cluster 25 11 NVE4451 not mapped 5.75 24.0 66.5% feature · violin
Cluster 25 12 NVE9193 not mapped 8.96 23.7 63.8% feature · violin
Cluster 25 13 NVE14802 not mapped 7.21 21.8 58.9% feature · violin
Cluster 25 14 NVE5222 not mapped 5.40 21.7 60.8% feature · violin
Cluster 25 15 NVE17231 not mapped 7.85 20.5 55.2% feature · violin
Cluster 25 16 NVE14803 not mapped 7.54 20.5 55.2% feature · violin
Cluster 25 17 NVE9443 not mapped 2.32 19.3 74.1% feature · violin
Cluster 25 18 NVE9331 not mapped 2.05 18.7 82.1% feature · violin
Cluster 25 19 NVE5259 not mapped 0.88 18.7 98.9% feature · violin
Cluster 25 20 NVE20452 not mapped 2.49 18.1 68.4% feature · violin
Cluster 25 21 NVE10151 not mapped 0.87 18.0 98.9% feature · violin
Cluster 25 22 NVE23993 not mapped 0.85 18.0 100.0% feature · violin
Cluster 25 23 NVE17226 not mapped 1.76 17.8 80.8% feature · violin
Cluster 25 24 NVE18895 not mapped 7.00 17.7 48.0% feature · violin
Cluster 25 25 NVE4703 not mapped 1.35 17.6 93.9% feature · violin
Cluster 25 26 NVE12326 not mapped 5.08 17.3 48.4% feature · violin
Cluster 25 27 NVE2822 not mapped 1.29 17.2 95.2% feature · violin
Cluster 25 28 NVE20682 not mapped 1.13 17.1 97.5% feature · violin
Cluster 25 29 NVE20630 not mapped 2.86 16.9 60.8% feature · violin
Cluster 25 30 NVE22308 not mapped 0.80 16.8 99.8% feature · violin
Cluster 25 31 NVE6125 not mapped 7.98 16.2 43.6% feature · violin
Cluster 25 32 NVE8767 not mapped 1.41 16.2 87.2% feature · violin
Cluster 25 33 NVE23963 not mapped 0.64 15.9 99.2% feature · violin
Cluster 25 34 NVE3143 not mapped 1.22 15.9 92.6% feature · violin
Cluster 25 35 NVE26074 not mapped 1.16 15.7 91.6% feature · violin
Cluster 25 36 NVE11676 not mapped 1.51 15.4 78.7% feature · violin
Cluster 25 37 NVE6578 not mapped 1.44 15.2 82.1% feature · violin
Cluster 25 38 NVE13301 not mapped 0.74 15.2 97.5% feature · violin
Cluster 25 39 NVE3351 not mapped 0.97 15.0 97.7% feature · violin
Cluster 25 40 NVE1389 not mapped 6.20 14.9 41.9% feature · violin
Cluster 25 41 NVE10899 not mapped 3.34 14.8 45.9% feature · violin
Cluster 25 42 NVE25933 not mapped 7.51 14.2 38.7% feature · violin
Cluster 25 43 NVE11519 not mapped 5.31 14.1 42.3% feature · violin
Cluster 25 44 NVE17752 not mapped 0.64 14.0 97.5% feature · violin
Cluster 25 45 NVE6784 not mapped 0.75 13.9 98.7% feature · violin
Cluster 25 46 NVE17574 not mapped 1.46 13.9 82.1% feature · violin
Cluster 25 47 NVE21967 not mapped 0.62 13.9 99.2% feature · violin
Cluster 25 48 NVE14265 not mapped 0.66 13.8 99.6% feature · violin
Cluster 25 49 NVE23244 not mapped 1.27 13.6 90.1% feature · violin
Cluster 25 50 NVE4299 not mapped 1.52 13.5 69.3% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 49 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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