Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Cluster 36477 Cluster 94851 Cluster 113969 Cluster 173507 Cluster 42947 Cluster 132768 Cluster 02704 Cluster 52280 Cluster 12197 Cluster 102076 Cluster 151890 Cluster 21591 Cluster 61575 Cluster 81502 Cluster 161299 Cluster 221091 Cluster 12986 Cluster 18836 Cluster 26833 Cluster 14644 Cluster 23641 Cluster 20624 Cluster 7577 Cluster 25475 Cluster 24435 Cluster 21200 Cluster 19191
This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE1396 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 10 1 NVE16797 not mapped 7.26 64.0 85.7% feature · violin
Cluster 10 2 NVE21562 not mapped 4.71 59.8 85.8% feature · violin
Cluster 10 3 NVE18470 not mapped 6.28 56.7 76.1% feature · violin
Cluster 10 4 NVE6615 not mapped 5.02 52.9 73.6% feature · violin
Cluster 10 5 NVE23699 not mapped 7.12 52.4 69.9% feature · violin
Cluster 10 6 NVE3706 not mapped 6.36 48.4 64.5% feature · violin
Cluster 10 7 NVE25581 not mapped 4.65 44.5 65.9% feature · violin
Cluster 10 8 NVE12489 not mapped 6.29 44.1 58.6% feature · violin
Cluster 10 9 NVE13575 not mapped 5.86 43.5 58.4% feature · violin
Cluster 10 10 NVE25366 not mapped 3.55 43.0 66.3% feature · violin
Cluster 10 11 NVE9921 not mapped 5.22 41.1 56.1% feature · violin
Cluster 10 12 NVE16798 not mapped 3.32 39.4 61.8% feature · violin
Cluster 10 13 NVE15194 not mapped 1.86 39.0 96.5% feature · violin
Cluster 10 14 NVE19849 not mapped 2.61 38.1 68.9% feature · violin
Cluster 10 15 NVE14422 not mapped 5.65 37.9 50.9% feature · violin
Cluster 10 16 XP_001636291.2 (NVE16594) 5.84 37.8 50.6% feature · violin
Cluster 10 17 NVE1396 not mapped 4.10 37.7 55.3% feature · violin
Cluster 10 18 XP_048587742.1 (NVE16599) 3.89 37.6 55.3% feature · violin
Cluster 10 19 NVE16799 not mapped 5.21 37.5 51.2% feature · violin
Cluster 10 20 NVE25580 not mapped 3.70 37.1 59.4% feature · violin
Cluster 10 21 NVE16598 not mapped 5.03 36.7 50.0% feature · violin
Cluster 10 22 NVE4706 not mapped 5.22 36.3 49.3% feature · violin
Cluster 10 23 NVE23700 not mapped 6.15 35.8 47.5% feature · violin
Cluster 10 24 NVE6211 not mapped 4.81 34.8 48.0% feature · violin
Cluster 10 25 NVE17634 not mapped 6.80 34.6 45.8% feature · violin
Cluster 10 26 XP_032232817.1 (NVE5216) 2.60 34.0 62.9% feature · violin
Cluster 10 27 NVE5223 not mapped 3.14 33.7 63.1% feature · violin
Cluster 10 28 NVE21285 not mapped 3.11 33.1 51.8% feature · violin
Cluster 10 29 NVE15668 not mapped 1.17 32.4 95.4% feature · violin
Cluster 10 30 NVE1395 not mapped 4.09 32.3 46.1% feature · violin
Cluster 10 31 XP_001633895.2 (NVE21851) 2.07 31.6 70.8% feature · violin
Cluster 10 32 XP_001639357.2 (NVE3871) 4.27 31.3 44.1% feature · violin
Cluster 10 33 XP_001640436.1 (NVE23956) 2.82 31.3 54.1% feature · violin
Cluster 10 34 XP_001624503.2 (NVE13992) 1.45 30.4 81.9% feature · violin
Cluster 10 35 NVE21004 not mapped 1.82 30.1 69.4% feature · violin
Cluster 10 36 NVE4741 not mapped 2.27 30.1 57.2% feature · violin
Cluster 10 37 NVE19202 not mapped 2.70 30.0 50.0% feature · violin
Cluster 10 38 NVE18469 not mapped 2.91 29.7 47.9% feature · violin
Cluster 10 39 NVE366 not mapped 2.47 29.6 56.3% feature · violin
Cluster 10 40 NVE23746 not mapped 4.17 29.5 41.7% feature · violin
Cluster 10 41 NVE9490 not mapped 2.03 29.4 77.5% feature · violin
Cluster 10 42 XP_032226160.2 (NVE17278) 6.43 29.2 38.5% feature · violin
Cluster 10 43 NVE14419 not mapped 2.24 28.8 56.3% feature · violin
Cluster 10 44 NVE17635 not mapped 6.40 28.8 38.2% feature · violin
Cluster 10 45 NVE5418 not mapped 1.77 28.7 75.6% feature · violin
Cluster 10 46 NVE10060 not mapped 2.09 28.6 59.6% feature · violin
Cluster 10 47 NVE11962 not mapped 1.86 28.5 65.7% feature · violin
Cluster 10 48 NVE3064 not mapped 1.83 28.5 64.7% feature · violin
Cluster 10 49 XP_032231895.2 (NVE6616) 5.65 28.3 37.7% feature · violin
Cluster 10 50 NVE18293 not mapped 2.23 28.2 54.6% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 41 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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