Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE16015 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 7 1 NVE19039 not mapped 9.64 40.4 98.4% feature · violin
Cluster 7 2 NVE19040 not mapped 8.81 39.8 97.2% feature · violin
Cluster 7 3 NVE3844 not mapped 9.00 39.2 95.5% feature · violin
Cluster 7 4 NVE19037 not mapped 9.61 39.0 95.0% feature · violin
Cluster 7 5 NVE3845 not mapped 8.86 38.8 95.0% feature · violin
Cluster 7 6 NVE20437 not mapped 8.25 37.9 92.7% feature · violin
Cluster 7 7 NVE9976 not mapped 7.88 37.3 94.5% feature · violin
Cluster 7 8 NVE25957 not mapped 9.39 37.0 89.9% feature · violin
Cluster 7 9 NVE3843 not mapped 9.75 37.0 89.8% feature · violin
Cluster 7 10 NVE18954 not mapped 8.38 36.6 89.6% feature · violin
Cluster 7 11 NVE4225 not mapped 9.02 36.6 89.6% feature · violin
Cluster 7 12 NVE18959 not mapped 9.74 36.3 89.8% feature · violin
Cluster 7 13 NVE3643 not mapped 8.00 35.8 87.9% feature · violin
Cluster 7 14 NVE24289 not mapped 9.04 35.6 86.7% feature · violin
Cluster 7 15 NVE21061 not mapped 8.95 34.6 84.2% feature · violin
Cluster 7 16 NVE22167 not mapped 7.27 34.5 85.4% feature · violin
Cluster 7 17 NVE142 not mapped 7.42 34.5 84.6% feature · violin
Cluster 7 18 NVE900 not mapped 9.04 34.4 84.1% feature · violin
Cluster 7 19 NVE10637 not mapped 9.31 34.2 83.2% feature · violin
Cluster 7 20 NVE901 not mapped 9.17 33.9 82.8% feature · violin
Cluster 7 21 NVE4226 not mapped 8.55 33.8 83.0% feature · violin
Cluster 7 22 NVE19597 not mapped 7.11 33.7 83.4% feature · violin
Cluster 7 23 NVE22139 not mapped 8.07 33.6 82.0% feature · violin
Cluster 7 24 NVE25772 not mapped 8.80 33.5 81.5% feature · violin
Cluster 7 25 NVE10241 not mapped 8.91 33.1 81.3% feature · violin
Cluster 7 26 NVE12609 not mapped 9.10 33.0 80.2% feature · violin
Cluster 7 27 NVE14991 not mapped 8.52 33.0 80.9% feature · violin
Cluster 7 28 NVE16015 not mapped 8.31 32.9 80.2% feature · violin
Cluster 7 29 NVE773 not mapped 7.39 32.8 81.1% feature · violin
Cluster 7 30 NVE2901 not mapped 8.24 32.7 79.9% feature · violin
Cluster 7 31 NVE897 not mapped 8.73 32.7 79.7% feature · violin
Cluster 7 32 NVE19036 not mapped 9.29 32.3 78.5% feature · violin
Cluster 7 33 NVE24294 not mapped 8.88 32.2 78.5% feature · violin
Cluster 7 34 NVE17479 not mapped 7.01 32.1 79.5% feature · violin
Cluster 7 35 NVE18974 not mapped 8.22 31.7 78.3% feature · violin
Cluster 7 36 NVE23051 not mapped 7.91 31.4 76.6% feature · violin
Cluster 7 37 NVE20501 not mapped 8.18 31.3 76.6% feature · violin
Cluster 7 38 XP_048578780.1 (NVE11004) 8.77 31.0 75.4% feature · violin
Cluster 7 39 NVE17665 not mapped 8.48 30.7 74.7% feature · violin
Cluster 7 40 NVE6863 not mapped 7.27 30.7 76.8% feature · violin
Cluster 7 41 NVE11707 not mapped 8.29 30.4 74.2% feature · violin
Cluster 7 42 NVE9332 not mapped 6.76 30.2 75.4% feature · violin
Cluster 7 43 NVE25239 not mapped 6.91 30.0 74.2% feature · violin
Cluster 7 44 NVE144 not mapped 7.94 29.8 72.8% feature · violin
Cluster 7 45 NVE14257 not mapped 7.45 29.8 73.0% feature · violin
Cluster 7 46 NVE9188 not mapped 8.24 29.6 72.3% feature · violin
Cluster 7 47 NVE9725 not mapped 6.79 29.6 74.0% feature · violin
Cluster 7 48 NVE3662 not mapped 8.95 29.5 71.6% feature · violin
Cluster 7 49 NVE15651 not mapped 8.20 29.4 71.9% feature · violin
Cluster 7 50 NVE12608 not mapped 8.60 29.3 71.2% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 49 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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