Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE16307 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 18 1 NVE908 not mapped 5.84 39.1 83.0% feature · violin
Cluster 18 2 NVE910 not mapped 7.31 37.7 77.2% feature · violin
Cluster 18 3 NVE16306 not mapped 4.31 35.5 82.7% feature · violin
Cluster 18 4 NVE25082 not mapped 2.89 35.4 92.3% feature · violin
Cluster 18 5 NVE9434 not mapped 6.38 35.3 73.4% feature · violin
Cluster 18 6 NVE6021 not mapped 4.29 35.0 82.1% feature · violin
Cluster 18 7 NVE25792 not mapped 3.37 34.4 89.8% feature · violin
Cluster 18 8 NVE11079 not mapped 3.55 32.9 80.9% feature · violin
Cluster 18 9 NVE13456 not mapped 2.87 32.6 88.6% feature · violin
Cluster 18 10 NVE22972 not mapped 4.34 31.0 71.1% feature · violin
Cluster 18 11 NVE6022 not mapped 4.25 30.7 71.1% feature · violin
Cluster 18 12 NVE18855 not mapped 3.96 30.6 71.7% feature · violin
Cluster 18 13 NVE22400 not mapped 2.76 30.3 81.7% feature · violin
Cluster 18 14 XP_001638052.2 (NVE10817) 4.36 30.3 70.5% feature · violin
Cluster 18 15 NVE726 not mapped 3.43 29.9 74.8% feature · violin
Cluster 18 16 NVE19323 not mapped 4.28 29.4 66.5% feature · violin
Cluster 18 17 NVE20337 not mapped 3.67 29.1 70.5% feature · violin
Cluster 18 18 NVE16683 not mapped 7.81 28.4 57.9% feature · violin
Cluster 18 19 NVE16307 not mapped 2.68 27.5 76.0% feature · violin
Cluster 18 20 NVE13354 not mapped 3.86 26.8 61.8% feature · violin
Cluster 18 21 NVE6010 not mapped 2.79 26.7 87.1% feature · violin
Cluster 18 22 NVE6308 not mapped 3.58 26.6 63.2% feature · violin
Cluster 18 23 NVE13150 not mapped 4.80 26.6 57.7% feature · violin
Cluster 18 24 NVE11258 not mapped 3.17 25.4 64.6% feature · violin
Cluster 18 25 NVE318 not mapped 4.12 25.1 56.9% feature · violin
Cluster 18 26 NVE21203 not mapped 2.26 24.8 78.6% feature · violin
Cluster 18 27 NVE909 not mapped 7.19 24.7 50.5% feature · violin
Cluster 18 28 XP_048579887.1 (NVE11364) 3.77 24.6 57.1% feature · violin
Cluster 18 29 NVE5299 not mapped 3.62 24.6 57.7% feature · violin
Cluster 18 30 NVE10140 not mapped 2.64 24.1 69.9% feature · violin
Cluster 18 31 NVE14871 not mapped 2.15 23.8 81.3% feature · violin
Cluster 18 32 NVE7496 not mapped 2.18 23.7 78.8% feature · violin
Cluster 18 33 NVE7254 not mapped 6.81 23.4 48.0% feature · violin
Cluster 18 34 XP_032241446.1 (NVE17645) 3.05 23.1 59.1% feature · violin
Cluster 18 35 NVE18762 not mapped 3.28 22.9 56.0% feature · violin
Cluster 18 36 NVE10463 not mapped 2.47 22.7 65.4% feature · violin
Cluster 18 37 NVE10816 not mapped 2.04 22.6 75.4% feature · violin
Cluster 18 38 NVE14037 not mapped 2.96 22.6 58.6% feature · violin
Cluster 18 39 NVE9010 not mapped 3.80 22.4 52.4% feature · violin
Cluster 18 40 NVE12051 not mapped 0.58 22.2 99.9% feature · violin
Cluster 18 41 XP_048578728.1 (NVE20336) 3.15 21.6 53.8% feature · violin
Cluster 18 42 NVE10189 not mapped 0.94 21.4 97.8% feature · violin
Cluster 18 43 NVE4998 not mapped 2.19 21.2 66.5% feature · violin
Cluster 18 44 XP_048584704.1 (NVE4331) 2.74 21.2 57.2% feature · violin
Cluster 18 45 NVE25987 not mapped 2.09 21.1 67.2% feature · violin
Cluster 18 46 NVE15894 not mapped 2.28 20.4 61.5% feature · violin
Cluster 18 47 NVE24920 not mapped 3.55 20.4 47.7% feature · violin
Cluster 18 48 NVE13969 not mapped 2.51 20.4 56.7% feature · violin
Cluster 18 49 NVE23474 not mapped 3.08 20.3 50.7% feature · violin
Cluster 18 50 NVE13841 not mapped 2.73 20.0 53.1% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 45 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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