Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE18510 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 0 1 NVE9490 not mapped 1.51 24.3 72.0% feature · violin
Cluster 0 2 NVE10553 not mapped 0.31 19.4 94.6% feature · violin
Cluster 0 3 NVE4488 not mapped 0.27 19.1 95.6% feature · violin
Cluster 0 4 NVE4021 not mapped 0.33 19.0 98.6% feature · violin
Cluster 0 5 NVE25966 not mapped 0.28 17.7 93.3% feature · violin
Cluster 0 6 NVE22048 not mapped 0.26 17.4 93.7% feature · violin
Cluster 0 7 NVE2942 not mapped 0.27 17.0 93.4% feature · violin
Cluster 0 8 NVE1333 not mapped 0.31 16.9 85.5% feature · violin
Cluster 0 9 NVE1638 not mapped 0.25 16.9 91.9% feature · violin
Cluster 0 10 XP_048584944.1 (NVE19282) 0.50 16.6 88.5% feature · violin
Cluster 0 11 NVE24745 not mapped 0.28 16.3 88.2% feature · violin
Cluster 0 12 NVE13931 not mapped 0.35 16.3 77.8% feature · violin
Cluster 0 13 NVE25369 not mapped 0.28 16.2 94.2% feature · violin
Cluster 0 14 NVE4736 not mapped 0.24 16.2 92.9% feature · violin
Cluster 0 15 XP_001622696.2 (NVE19312) 0.21 16.2 96.0% feature · violin
Cluster 0 16 NVE21507 not mapped 0.21 16.1 96.1% feature · violin
Cluster 0 17 NVE23965 not mapped 0.23 16.1 96.3% feature · violin
Cluster 0 18 XP_001629584.1 (NVE3732) 0.24 16.0 96.3% feature · violin
Cluster 0 19 NVE5003 not mapped 1.05 15.9 52.0% feature · violin
Cluster 0 20 NVE11447 not mapped 0.20 15.6 91.2% feature · violin
Cluster 0 21 NVE13667 not mapped 0.17 15.6 92.6% feature · violin
Cluster 0 22 NVE10419 not mapped 0.19 15.3 94.2% feature · violin
Cluster 0 23 NVE15194 not mapped 0.76 15.2 89.8% feature · violin
Cluster 0 24 NVE16142 not mapped 0.21 15.1 95.3% feature · violin
Cluster 0 25 NVE11279 not mapped 0.25 15.1 81.2% feature · violin
Cluster 0 26 NVE2161 not mapped 0.18 15.0 97.3% feature · violin
Cluster 0 27 NVE21578 not mapped 0.18 14.7 95.4% feature · violin
Cluster 0 28 NVE9318 not mapped 0.17 14.6 93.3% feature · violin
Cluster 0 29 NVE2507 not mapped 0.14 14.3 89.3% feature · violin
Cluster 0 30 NVE2256 not mapped 0.21 14.3 89.4% feature · violin
Cluster 0 31 NVE4298 not mapped 0.16 14.3 87.4% feature · violin
Cluster 0 32 NVE19817 not mapped 0.18 14.1 87.2% feature · violin
Cluster 0 33 NVE21967 not mapped 0.15 14.1 95.1% feature · violin
Cluster 0 34 NVE23993 not mapped 0.20 14.0 95.4% feature · violin
Cluster 0 35 XP_001633500.3 (NVE22721) 0.20 14.0 90.7% feature · violin
Cluster 0 36 NVE10009 not mapped 0.15 13.9 92.4% feature · violin
Cluster 0 37 NVE16447 not mapped 1.15 13.9 45.8% feature · violin
Cluster 0 38 NVE22308 not mapped 0.16 13.8 94.6% feature · violin
Cluster 0 39 NVE18510 not mapped 0.12 13.8 92.9% feature · violin
Cluster 0 40 NVE23054 not mapped 0.16 13.7 92.6% feature · violin
Cluster 0 41 NVE12879 not mapped 0.19 13.7 95.0% feature · violin
Cluster 0 42 NVE9450 not mapped 0.13 13.6 92.1% feature · violin
Cluster 0 43 NVE6784 not mapped 0.17 13.5 93.6% feature · violin
Cluster 0 44 NVE882 not mapped 0.18 13.5 87.9% feature · violin
Cluster 0 45 NVE12122 not mapped 0.13 13.3 93.3% feature · violin
Cluster 0 46 NVE22651 not mapped 1.01 13.2 42.0% feature · violin
Cluster 0 47 NVE45 not mapped 0.13 13.2 94.6% feature · violin
Cluster 0 48 NVE5259 not mapped 0.16 13.1 94.1% feature · violin
Cluster 0 49 NVE25544 not mapped 0.88 13.0 47.4% feature · violin
Cluster 0 50 NVE11807 not mapped 0.15 13.0 96.2% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 46 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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