Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE19118 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 12 1 NVE3568 not mapped 5.12 35.6 70.9% feature · violin
Cluster 12 2 NVE15043 not mapped 3.75 31.2 67.4% feature · violin
Cluster 12 3 NVE19743 not mapped 3.32 30.3 74.2% feature · violin
Cluster 12 4 NVE23561 not mapped 4.98 29.9 59.9% feature · violin
Cluster 12 5 NVE17746 not mapped 4.85 27.5 54.8% feature · violin
Cluster 12 6 NVE20630 not mapped 3.34 27.3 64.0% feature · violin
Cluster 12 7 NVE16447 not mapped 3.02 26.8 76.2% feature · violin
Cluster 12 8 NVE9490 not mapped 2.39 24.2 85.9% feature · violin
Cluster 12 9 XP_032239982.1 (NVE20438) 3.31 23.8 55.8% feature · violin
Cluster 12 10 NVE12937 not mapped 6.37 22.9 43.4% feature · violin
Cluster 12 11 XP_001641215.2 (NVE16405) 2.26 22.5 62.5% feature · violin
Cluster 12 12 NVE25544 not mapped 1.98 22.0 71.7% feature · violin
Cluster 12 13 NVE5003 not mapped 2.04 21.9 73.0% feature · violin
Cluster 12 14 NVE22651 not mapped 2.02 21.0 66.7% feature · violin
Cluster 12 15 NVE12960 not mapped 6.39 20.9 39.7% feature · violin
Cluster 12 16 XP_048584944.1 (NVE19282) 1.11 20.7 96.8% feature · violin
Cluster 12 17 XP_048582497.1 (NVE21390) 2.52 20.7 56.5% feature · violin
Cluster 12 18 NVE23052 not mapped 1.11 20.3 91.6% feature · violin
Cluster 12 19 NVE20401 not mapped 1.68 20.2 73.4% feature · violin
Cluster 12 20 NVE11968 not mapped 1.79 20.0 65.1% feature · violin
Cluster 12 21 NVE18679 not mapped 4.49 20.0 39.7% feature · violin
Cluster 12 22 NVE22689 not mapped 1.54 19.7 77.1% feature · violin
Cluster 12 23 NVE17311 not mapped 1.74 19.7 70.3% feature · violin
Cluster 12 24 NVE10626 not mapped 2.49 19.7 49.8% feature · violin
Cluster 12 25 NVE11962 not mapped 1.76 19.6 71.4% feature · violin
Cluster 12 26 NVE21741 not mapped 1.90 19.4 58.9% feature · violin
Cluster 12 27 NVE19436 not mapped 3.76 19.2 40.0% feature · violin
Cluster 12 28 NVE7441 not mapped 1.57 19.2 72.3% feature · violin
Cluster 12 29 NVE21004 not mapped 1.65 19.1 71.6% feature · violin
Cluster 12 30 NVE23962 not mapped 1.53 19.1 72.0% feature · violin
Cluster 12 31 NVE4477 not mapped 1.68 19.0 68.9% feature · violin
Cluster 12 32 NVE18993 not mapped 1.68 18.7 65.2% feature · violin
Cluster 12 33 NVE15668 not mapped 0.86 18.4 97.9% feature · violin
Cluster 12 34 NVE21175 not mapped 1.55 18.4 72.1% feature · violin
Cluster 12 35 NVE18548 not mapped 1.35 18.3 79.6% feature · violin
Cluster 12 36 NVE5828 not mapped 1.97 18.2 52.9% feature · violin
Cluster 12 37 XP_001635734.2 (NVE17817) 1.87 18.1 58.6% feature · violin
Cluster 12 38 NVE6121 not mapped 1.33 17.7 76.1% feature · violin
Cluster 12 39 NVE19118 not mapped 1.63 17.7 61.7% feature · violin
Cluster 12 40 NVE18987 not mapped 1.61 17.6 60.5% feature · violin
Cluster 12 41 XP_001640083.2 (NVE339) 1.22 17.6 91.7% feature · violin
Cluster 12 42 NVE16345 not mapped 1.66 17.6 62.0% feature · violin
Cluster 12 43 NVE5717 not mapped 2.04 17.5 48.4% feature · violin
Cluster 12 44 NVE1706 not mapped 1.49 17.4 68.4% feature · violin
Cluster 12 45 NVE10060 not mapped 1.65 17.4 62.3% feature · violin
Cluster 12 46 NVE20761 not mapped 1.49 17.4 63.8% feature · violin
Cluster 12 47 NVE22235 not mapped 1.68 17.4 56.3% feature · violin
Cluster 12 48 XP_001637260.3 (NVE13522) 1.54 17.4 66.2% feature · violin
Cluster 12 49 NVE14577 not mapped 2.16 17.4 46.7% feature · violin
Cluster 12 50 NVE24997 not mapped 1.40 17.3 70.7% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 43 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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