Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Cluster 36477 Cluster 94851 Cluster 113969 Cluster 173507 Cluster 42947 Cluster 132768 Cluster 02704 Cluster 52280 Cluster 12197 Cluster 102076 Cluster 151890 Cluster 21591 Cluster 61575 Cluster 81502 Cluster 161299 Cluster 221091 Cluster 12986 Cluster 18836 Cluster 26833 Cluster 14644 Cluster 23641 Cluster 20624 Cluster 7577 Cluster 25475 Cluster 24435 Cluster 21200 Cluster 19191
This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE19388 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 9 1 NVE15943 not mapped 5.10 91.6 93.0% feature · violin
Cluster 9 2 NVE1939 not mapped 2.80 90.4 99.9% feature · violin
Cluster 9 3 NVE15772 not mapped 5.24 89.2 83.9% feature · violin
Cluster 9 4 NVE9787 not mapped 3.78 89.2 99.5% feature · violin
Cluster 9 5 NVE14362 not mapped 4.93 87.7 89.0% feature · violin
Cluster 9 6 NVE21150 not mapped 4.52 80.4 78.8% feature · violin
Cluster 9 7 NVE18456 not mapped 3.81 78.1 89.8% feature · violin
Cluster 9 8 NVE4855 not mapped 4.42 74.4 72.6% feature · violin
Cluster 9 9 XP_032234748.2 (NVE2426) 4.50 73.1 71.7% feature · violin
Cluster 9 10 NVE7446 not mapped 3.13 71.5 83.4% feature · violin
Cluster 9 11 XP_001629262.3 (NVE4355) 4.83 70.7 67.0% feature · violin
Cluster 9 12 NVE21151 not mapped 4.80 68.7 64.9% feature · violin
Cluster 9 13 NVE2673 not mapped 4.29 67.1 67.0% feature · violin
Cluster 9 14 NVE21289 not mapped 4.88 63.1 59.5% feature · violin
Cluster 9 15 NVE14934 not mapped 2.62 61.3 75.9% feature · violin
Cluster 9 16 XP_001636442.3 (NVE16112) 3.40 60.7 66.3% feature · violin
Cluster 9 17 NVE7520 not mapped 4.67 59.9 57.0% feature · violin
Cluster 9 18 NVE25290 not mapped 4.84 57.7 54.3% feature · violin
Cluster 9 19 NVE15529 not mapped 4.36 57.5 55.9% feature · violin
Cluster 9 20 NVE19791 not mapped 4.90 57.2 53.4% feature · violin
Cluster 9 21 NVE8113 not mapped 4.17 57.1 55.5% feature · violin
Cluster 9 22 NVE19388 not mapped 3.00 56.3 63.3% feature · violin
Cluster 9 23 NVE1757 not mapped 4.09 56.1 55.0% feature · violin
Cluster 9 24 NVE8329 not mapped 4.22 55.4 54.4% feature · violin
Cluster 9 25 NVE25571 not mapped 2.51 53.7 69.9% feature · violin
Cluster 9 26 NVE3046 not mapped 4.41 53.5 50.9% feature · violin
Cluster 9 27 NVE25570 not mapped 0.87 53.0 98.4% feature · violin
Cluster 9 28 NVE23993 not mapped 0.79 52.8 98.7% feature · violin
Cluster 9 29 NVE12857 not mapped 4.84 52.7 49.2% feature · violin
Cluster 9 30 XP_001639319.1 (NVE3785) 1.41 52.7 89.7% feature · violin
Cluster 9 31 NVE9354 not mapped 4.28 52.0 49.9% feature · violin
Cluster 9 32 XP_001631731.3 (NVE26034) 4.38 51.5 49.2% feature · violin
Cluster 9 33 XP_032227228.2 (NVE14737) 2.50 51.0 64.1% feature · violin
Cluster 9 34 NVE25569 not mapped 4.59 50.4 47.4% feature · violin
Cluster 9 35 NVE22411 not mapped 1.57 49.8 92.2% feature · violin
Cluster 9 36 NVE3579 not mapped 3.05 49.4 54.3% feature · violin
Cluster 9 37 NVE1017 not mapped 3.41 49.4 51.3% feature · violin
Cluster 9 38 NVE1244 not mapped 4.17 49.3 48.0% feature · violin
Cluster 9 39 NVE22473 not mapped 2.71 49.3 60.4% feature · violin
Cluster 9 40 NVE15860 not mapped 4.31 48.8 46.9% feature · violin
Cluster 9 41 NVE8852 not mapped 3.39 48.2 50.1% feature · violin
Cluster 9 42 NVE20113 not mapped 1.92 47.3 69.9% feature · violin
Cluster 9 43 NVE540 not mapped 3.24 47.3 50.4% feature · violin
Cluster 9 44 NVE12840 not mapped 4.19 47.1 45.5% feature · violin
Cluster 9 45 XP_001622696.2 (NVE19312) 0.65 46.2 98.8% feature · violin
Cluster 9 46 NVE12983 not mapped 2.97 46.1 51.1% feature · violin
Cluster 9 47 NVE7494 not mapped 4.96 45.6 41.9% feature · violin
Cluster 9 48 NVE15945 not mapped 4.06 45.4 45.1% feature · violin
Cluster 9 49 NVE8429 not mapped 0.75 45.0 98.0% feature · violin
Cluster 9 50 XP_048590489.1 (NVE13457) 3.33 45.0 46.4% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 42 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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