Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE19785 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 2 1 NVE19785 not mapped 4.61 55.0 90.4% feature · violin
Cluster 2 2 NVE15413 not mapped 5.01 50.8 81.5% feature · violin
Cluster 2 3 NVE8638 not mapped 3.38 46.8 87.6% feature · violin
Cluster 2 4 NVE26201 not mapped 3.68 46.6 82.8% feature · violin
Cluster 2 5 NVE6627 not mapped 3.64 45.8 80.5% feature · violin
Cluster 2 6 NVE8173 not mapped 3.85 45.1 77.1% feature · violin
Cluster 2 7 NVE14871 not mapped 2.81 42.8 91.3% feature · violin
Cluster 2 8 NVE25565 not mapped 2.67 42.6 89.1% feature · violin
Cluster 2 9 NVE19012 not mapped 3.78 42.0 72.3% feature · violin
Cluster 2 10 NVE2956 not mapped 3.91 39.2 66.5% feature · violin
Cluster 2 11 NVE20963 not mapped 3.11 37.2 72.5% feature · violin
Cluster 2 12 NVE4118 not mapped 3.42 36.5 64.7% feature · violin
Cluster 2 13 NVE5239 not mapped 1.65 36.3 94.0% feature · violin
Cluster 2 14 NVE14915 not mapped 4.25 35.5 58.0% feature · violin
Cluster 2 15 NVE18698 not mapped 3.36 35.0 62.7% feature · violin
Cluster 2 16 NVE6975 not mapped 3.16 34.5 63.3% feature · violin
Cluster 2 17 NVE22010 not mapped 3.25 34.0 62.4% feature · violin
Cluster 2 18 NVE13155 not mapped 2.56 33.4 71.5% feature · violin
Cluster 2 19 NVE21264 not mapped 2.95 33.2 62.6% feature · violin
Cluster 2 20 NVE23549 not mapped 3.14 33.1 61.3% feature · violin
Cluster 2 21 NVE15171 not mapped 2.50 32.8 68.6% feature · violin
Cluster 2 22 NVE15538 not mapped 1.82 32.2 89.9% feature · violin
Cluster 2 23 NVE1636 not mapped 3.17 32.1 58.4% feature · violin
Cluster 2 24 NVE9355 not mapped 3.21 31.9 57.5% feature · violin
Cluster 2 25 NVE20505 not mapped 2.79 31.7 61.8% feature · violin
Cluster 2 26 NVE6286 not mapped 3.23 31.2 56.5% feature · violin
Cluster 2 27 NVE17750 not mapped 3.26 31.1 55.9% feature · violin
Cluster 2 28 NVE3744 not mapped 3.09 30.6 56.7% feature · violin
Cluster 2 29 NVE10932 not mapped 3.29 30.5 54.8% feature · violin
Cluster 2 30 NVE2812 not mapped 3.18 29.5 53.2% feature · violin
Cluster 2 31 NVE1529 not mapped 2.55 29.0 59.0% feature · violin
Cluster 2 32 NVE14614 not mapped 3.15 28.5 51.7% feature · violin
Cluster 2 33 NVE9903 not mapped 2.60 28.2 57.4% feature · violin
Cluster 2 34 NVE1723 not mapped 3.09 28.2 51.4% feature · violin
Cluster 2 35 NVE23145 not mapped 2.05 28.0 84.4% feature · violin
Cluster 2 36 NVE741 not mapped 3.25 28.0 49.9% feature · violin
Cluster 2 37 NVE14372 not mapped 3.10 27.3 50.3% feature · violin
Cluster 2 38 NVE13967 not mapped 2.70 27.2 53.4% feature · violin
Cluster 2 39 NVE1984 not mapped 2.98 27.1 50.7% feature · violin
Cluster 2 40 NVE2329 not mapped 2.72 27.1 53.0% feature · violin
Cluster 2 41 NVE23660 not mapped 2.70 26.8 52.5% feature · violin
Cluster 2 42 NVE25614 not mapped 2.40 26.7 55.9% feature · violin
Cluster 2 43 NVE10962 not mapped 3.02 26.6 48.8% feature · violin
Cluster 2 44 NVE16487 not mapped 2.58 26.5 53.4% feature · violin
Cluster 2 45 NVE14608 not mapped 4.26 26.3 42.6% feature · violin
Cluster 2 46 NVE19746 not mapped 2.36 26.3 55.5% feature · violin
Cluster 2 47 NVE23293 not mapped 2.81 26.3 50.1% feature · violin
Cluster 2 48 NVE3831 not mapped 2.51 25.9 52.9% feature · violin
Cluster 2 49 NVE24414 not mapped 3.11 25.8 47.0% feature · violin
Cluster 2 50 NVE23431 not mapped 2.77 25.5 49.3% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 50 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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