Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE20961 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 5 1 NVE21864 not mapped 4.48 66.2 93.2% feature · violin
Cluster 5 2 XP_032228155.2 (NVE12762) 4.13 57.6 82.4% feature · violin
Cluster 5 3 NVE15970 not mapped 2.71 52.2 89.3% feature · violin
Cluster 5 4 XP_032221989.2 (NVE20961) 4.23 42.5 58.1% feature · violin
Cluster 5 5 NVE24655 not mapped 3.79 39.9 56.4% feature · violin
Cluster 5 6 NVE13654 not mapped 4.23 39.7 54.6% feature · violin
Cluster 5 7 NVE17753 not mapped 3.59 36.7 52.7% feature · violin
Cluster 5 8 XP_032232313.1 (NVE6000) 5.90 35.9 45.9% feature · violin
Cluster 5 9 XP_048584944.1 (NVE19282) 1.29 35.5 98.3% feature · violin
Cluster 5 10 NVE24201 not mapped 2.97 34.6 53.8% feature · violin
Cluster 5 11 NVE24992 not mapped 2.48 33.8 57.7% feature · violin
Cluster 5 12 NVE6121 not mapped 1.67 33.5 83.6% feature · violin
Cluster 5 13 NVE20962 not mapped 4.41 33.2 44.3% feature · violin
Cluster 5 14 XP_001637175.1 (NVE13963) 4.76 33.1 43.6% feature · violin
Cluster 5 15 NVE5003 not mapped 1.95 32.1 77.5% feature · violin
Cluster 5 16 XP_032231493.2 (NVE7206) 3.46 31.7 46.9% feature · violin
Cluster 5 17 XP_032227647.2 (NVE14034) 1.81 31.5 67.1% feature · violin
Cluster 5 18 NVE11962 not mapped 1.85 31.4 76.9% feature · violin
Cluster 5 19 XP_001632969.2 (NVE23864) 2.04 31.3 59.3% feature · violin
Cluster 5 20 NVE1650 not mapped 3.11 31.0 46.2% feature · violin
Cluster 5 21 NVE21175 not mapped 1.69 30.4 78.1% feature · violin
Cluster 5 22 NVE8463 not mapped 1.70 29.7 73.0% feature · violin
Cluster 5 23 NVE17311 not mapped 1.71 29.6 74.4% feature · violin
Cluster 5 24 NVE22767 not mapped 5.09 29.4 38.3% feature · violin
Cluster 5 25 XP_001635037.1 (NVE19830) 1.68 29.4 66.5% feature · violin
Cluster 5 26 NVE21973 not mapped 1.64 29.3 73.2% feature · violin
Cluster 5 27 NVE191 not mapped 2.79 29.2 47.9% feature · violin
Cluster 5 28 NVE4477 not mapped 1.71 29.2 71.5% feature · violin
Cluster 5 29 NVE7441 not mapped 1.58 28.9 77.8% feature · violin
Cluster 5 30 NVE25544 not mapped 1.72 28.7 72.4% feature · violin
Cluster 5 31 NVE21004 not mapped 1.63 28.7 76.2% feature · violin
Cluster 5 32 NVE22428 not mapped 1.78 28.4 58.6% feature · violin
Cluster 5 33 NVE22651 not mapped 1.81 28.1 64.3% feature · violin
Cluster 5 34 NVE13805 not mapped 1.57 27.8 67.1% feature · violin
Cluster 5 35 NVE12519 not mapped 1.60 27.7 75.7% feature · violin
Cluster 5 36 NVE4208 not mapped 3.98 27.6 37.5% feature · violin
Cluster 5 37 NVE3064 not mapped 1.60 27.6 72.8% feature · violin
Cluster 5 38 XP_001641215.2 (NVE16405) 1.91 27.6 55.7% feature · violin
Cluster 5 39 NVE8767 not mapped 1.24 27.5 89.0% feature · violin
Cluster 5 40 XP_001628601.2 (NVE5600) 1.85 27.5 54.2% feature · violin
Cluster 5 41 NVE21267 not mapped 1.58 27.4 66.2% feature · violin
Cluster 5 42 NVE23578 not mapped 2.16 27.0 48.0% feature · violin
Cluster 5 43 NVE5659 not mapped 1.48 26.9 72.3% feature · violin
Cluster 5 44 NVE12759 not mapped 1.54 26.8 64.8% feature · violin
Cluster 5 45 NVE11720 not mapped 1.62 26.8 59.7% feature · violin
Cluster 5 46 NVE1135 not mapped 1.48 26.7 68.2% feature · violin
Cluster 5 47 NVE3289 not mapped 1.65 26.7 59.9% feature · violin
Cluster 5 48 NVE21972 not mapped 1.39 26.6 79.4% feature · violin
Cluster 5 49 NVE23792 not mapped 1.33 26.5 80.0% feature · violin
Cluster 5 50 NVE17462 not mapped 1.68 26.3 56.4% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 39 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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