Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE23818 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 26 1 XP_001639449.1 (NVE3912) 9.43 49.0 99.0% feature · violin
Cluster 26 2 NVE20160 not mapped 9.45 49.0 99.0% feature · violin
Cluster 26 3 NVE2876 not mapped 8.70 48.7 99.0% feature · violin
Cluster 26 4 NVE1725 not mapped 9.01 47.9 97.0% feature · violin
Cluster 26 5 NVE6666 not mapped 5.06 46.3 97.7% feature · violin
Cluster 26 6 NVE19155 not mapped 8.18 45.1 91.7% feature · violin
Cluster 26 7 NVE17049 not mapped 9.18 43.8 88.7% feature · violin
Cluster 26 8 NVE14552 not mapped 5.98 43.8 92.4% feature · violin
Cluster 26 9 NVE4315 not mapped 3.88 43.5 96.8% feature · violin
Cluster 26 10 NVE1642 not mapped 6.12 42.1 87.5% feature · violin
Cluster 26 11 NVE21834 not mapped 9.79 41.7 84.4% feature · violin
Cluster 26 12 NVE2557 not mapped 6.78 41.4 85.4% feature · violin
Cluster 26 13 NVE7822 not mapped 9.61 40.6 82.2% feature · violin
Cluster 26 14 XP_048590489.1 (NVE13457) 5.54 39.0 83.2% feature · violin
Cluster 26 15 NVE19503 not mapped 4.59 38.6 84.0% feature · violin
Cluster 26 16 NVE23813 not mapped 2.20 33.5 98.6% feature · violin
Cluster 26 17 NVE3445 not mapped 2.72 33.0 90.0% feature · violin
Cluster 26 18 XP_048587879.1 (NVE24488) 4.92 32.7 71.8% feature · violin
Cluster 26 19 NVE12038 not mapped 7.95 32.3 65.8% feature · violin
Cluster 26 20 NVE16356 not mapped 7.30 30.8 63.0% feature · violin
Cluster 26 21 NVE2822 not mapped 1.71 30.6 95.8% feature · violin
Cluster 26 22 NVE1757 not mapped 4.24 30.2 69.3% feature · violin
Cluster 26 23 NVE7446 not mapped 2.92 30.0 84.6% feature · violin
Cluster 26 24 NVE12992 not mapped 4.44 29.5 67.2% feature · violin
Cluster 26 25 XP_032220669.1 (NVE2120) 4.21 29.1 65.8% feature · violin
Cluster 26 26 NVE478 not mapped 5.59 28.3 59.9% feature · violin
Cluster 26 27 NVE12039 not mapped 0.89 27.4 99.3% feature · violin
Cluster 26 28 NVE8007 not mapped 5.41 27.1 57.3% feature · violin
Cluster 26 29 NVE477 not mapped 4.22 26.4 60.0% feature · violin
Cluster 26 30 NVE19102 not mapped 2.77 26.4 71.8% feature · violin
Cluster 26 31 NVE23181 not mapped 2.31 26.3 91.7% feature · violin
Cluster 26 32 NVE10788 not mapped 3.75 26.0 61.0% feature · violin
Cluster 26 33 NVE8429 not mapped 1.00 25.7 99.0% feature · violin
Cluster 26 34 XP_001641269.1 (NVE16502) 2.14 25.2 82.8% feature · violin
Cluster 26 35 XP_032237477.1 (NVE24738) 2.58 25.0 89.7% feature · violin
Cluster 26 36 NVE23818 not mapped 1.73 24.8 90.8% feature · violin
Cluster 26 37 NVE19184 not mapped 2.26 24.6 78.8% feature · violin
Cluster 26 38 NVE22273 not mapped 4.64 24.0 52.2% feature · violin
Cluster 26 39 NVE10147 not mapped 3.49 23.7 57.4% feature · violin
Cluster 26 40 NVE18711 not mapped 1.09 23.5 96.3% feature · violin
Cluster 26 41 NVE10719 not mapped 5.85 23.3 49.3% feature · violin
Cluster 26 42 NVE6160 not mapped 3.36 23.0 56.3% feature · violin
Cluster 26 43 XP_032222519.2 (NVE16297) 2.21 22.8 83.2% feature · violin
Cluster 26 44 NVE25082 not mapped 1.81 22.8 85.0% feature · violin
Cluster 26 45 NVE18163 not mapped 2.87 22.2 58.2% feature · violin
Cluster 26 46 NVE1907 not mapped 1.76 22.1 92.1% feature · violin
Cluster 26 47 XP_001629322.1 (NVE4206) 4.06 22.1 49.7% feature · violin
Cluster 26 48 NVE5716 not mapped 2.63 22.1 62.2% feature · violin
Cluster 26 49 NVE10562 not mapped 3.12 21.7 53.8% feature · violin
Cluster 26 50 NVE19721 not mapped 8.17 21.0 42.7% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 42 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

TOP