Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE24472 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 1 1 NVE16447 not mapped 4.74 62.8 96.7% feature · violin
Cluster 1 2 NVE9490 not mapped 3.87 59.6 97.3% feature · violin
Cluster 1 3 XP_048582497.1 (NVE21390) 4.31 55.3 81.5% feature · violin
Cluster 1 4 NVE3880 not mapped 4.59 53.7 77.1% feature · violin
Cluster 1 5 NVE23456 not mapped 3.40 49.1 85.2% feature · violin
Cluster 1 6 XP_048584944.1 (NVE19282) 1.65 46.3 97.9% feature · violin
Cluster 1 7 NVE23841 not mapped 3.14 46.1 76.7% feature · violin
Cluster 1 8 NVE16398 not mapped 3.31 45.6 71.1% feature · violin
Cluster 1 9 NVE22651 not mapped 2.79 44.7 80.6% feature · violin
Cluster 1 10 NVE5003 not mapped 2.66 43.4 82.7% feature · violin
Cluster 1 11 NVE15194 not mapped 2.15 43.3 99.4% feature · violin
Cluster 1 12 NVE14871 not mapped 2.39 42.3 91.3% feature · violin
Cluster 1 13 NVE6393 not mapped 2.64 42.3 79.0% feature · violin
Cluster 1 14 NVE25544 not mapped 2.49 42.1 82.3% feature · violin
Cluster 1 15 NVE4307 not mapped 2.39 41.6 78.6% feature · violin
Cluster 1 16 NVE11962 not mapped 2.44 41.3 83.0% feature · violin
Cluster 1 17 XP_001635734.2 (NVE17817) 2.83 41.0 73.7% feature · violin
Cluster 1 18 NVE21992 not mapped 3.79 40.9 59.4% feature · violin
Cluster 1 19 NVE21004 not mapped 2.28 40.6 82.9% feature · violin
Cluster 1 20 NVE19943 not mapped 2.33 40.4 82.2% feature · violin
Cluster 1 21 NVE20401 not mapped 2.21 40.3 83.2% feature · violin
Cluster 1 22 NVE17311 not mapped 2.31 40.2 81.1% feature · violin
Cluster 1 23 NVE6021 not mapped 2.60 39.8 75.0% feature · violin
Cluster 1 24 NVE18993 not mapped 2.29 39.8 78.4% feature · violin
Cluster 1 25 NVE7441 not mapped 2.14 39.6 82.3% feature · violin
Cluster 1 26 NVE23962 not mapped 2.08 39.4 83.4% feature · violin
Cluster 1 27 NVE23303 not mapped 3.04 39.4 64.0% feature · violin
Cluster 1 28 NVE19935 not mapped 2.90 39.3 63.5% feature · violin
Cluster 1 29 XP_032237610.1 (NVE24472) 2.71 38.9 67.3% feature · violin
Cluster 1 30 NVE4477 not mapped 2.24 38.7 80.8% feature · violin
Cluster 1 31 NVE8526 not mapped 2.20 38.7 82.2% feature · violin
Cluster 1 32 NVE5828 not mapped 2.60 38.6 66.2% feature · violin
Cluster 1 33 NVE10626 not mapped 3.09 38.6 60.4% feature · violin
Cluster 1 34 NVE24077 not mapped 2.43 38.3 70.3% feature · violin
Cluster 1 35 NVE22689 not mapped 1.97 38.2 84.6% feature · violin
Cluster 1 36 NVE15668 not mapped 1.18 38.0 98.0% feature · violin
Cluster 1 37 XP_048582496.1 (NVE21385) 3.35 38.0 57.8% feature · violin
Cluster 1 38 NVE3935 not mapped 2.25 37.8 80.4% feature · violin
Cluster 1 39 NVE18548 not mapped 1.85 37.7 86.3% feature · violin
Cluster 1 40 NVE3942 not mapped 2.40 37.7 68.7% feature · violin
Cluster 1 41 NVE21175 not mapped 2.08 37.6 82.7% feature · violin
Cluster 1 42 NVE3064 not mapped 2.18 37.5 78.8% feature · violin
Cluster 1 43 NVE10060 not mapped 2.31 37.4 74.6% feature · violin
Cluster 1 44 XP_001640083.2 (NVE339) 1.65 37.3 94.5% feature · violin
Cluster 1 45 NVE9767 not mapped 2.61 37.1 65.4% feature · violin
Cluster 1 46 NVE16345 not mapped 2.29 37.0 72.4% feature · violin
Cluster 1 47 XP_001637260.3 (NVE13522) 2.13 36.9 78.0% feature · violin
Cluster 1 48 NVE3078 not mapped 1.75 36.9 87.7% feature · violin
Cluster 1 49 NVE5223 not mapped 2.64 36.8 73.6% feature · violin
Cluster 1 50 NVE22695 not mapped 1.81 36.8 85.8% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 43 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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