Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE25792 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 11 1 NVE7724 not mapped 4.82 67.1 80.4% feature · violin
Cluster 11 2 NVE6010 not mapped 3.22 62.1 87.2% feature · violin
Cluster 11 3 NVE23145 not mapped 2.68 55.7 94.5% feature · violin
Cluster 11 4 NVE13160 not mapped 2.50 53.8 85.2% feature · violin
Cluster 11 5 NVE11079 not mapped 2.77 52.3 68.8% feature · violin
Cluster 11 6 NVE25792 not mapped 2.49 52.1 80.4% feature · violin
Cluster 11 7 NVE21409 not mapped 2.18 50.8 86.4% feature · violin
Cluster 11 8 NVE18855 not mapped 3.30 50.0 58.8% feature · violin
Cluster 11 9 NVE21090 not mapped 2.01 49.2 90.2% feature · violin
Cluster 11 10 NVE17843 not mapped 3.33 48.7 63.5% feature · violin
Cluster 11 11 NVE8266 not mapped 3.03 47.0 64.7% feature · violin
Cluster 11 12 NVE10968 not mapped 2.18 45.9 76.2% feature · violin
Cluster 11 13 NVE20852 not mapped 2.61 44.7 63.9% feature · violin
Cluster 11 14 XP_032241044.1 (NVE18272) 1.85 44.4 85.6% feature · violin
Cluster 11 15 NVE15194 not mapped 1.73 43.1 97.9% feature · violin
Cluster 11 16 NVE69 not mapped 0.95 42.6 98.0% feature · violin
Cluster 11 17 NVE14037 not mapped 3.00 41.8 50.8% feature · violin
Cluster 11 18 XP_048578359.1 (NVE17845) 3.19 41.8 51.0% feature · violin
Cluster 11 19 NVE4448 not mapped 2.50 41.6 64.6% feature · violin
Cluster 11 20 NVE1907 not mapped 1.58 41.2 91.4% feature · violin
Cluster 11 21 XP_032239984.1 (NVE20305) 1.78 40.5 84.4% feature · violin
Cluster 11 22 NVE3351 not mapped 0.97 40.4 97.5% feature · violin
Cluster 11 23 XP_032236866.1 (NVE25536) 1.71 40.0 79.9% feature · violin
Cluster 11 24 NVE25082 not mapped 1.53 39.4 79.4% feature · violin
Cluster 11 25 NVE3068 not mapped 1.77 39.1 68.7% feature · violin
Cluster 11 26 NVE17842 not mapped 2.84 38.9 53.5% feature · violin
Cluster 11 27 NVE13022 not mapped 2.24 38.8 56.0% feature · violin
Cluster 11 28 NVE13456 not mapped 1.64 38.8 77.8% feature · violin
Cluster 11 29 NVE13447 not mapped 0.77 38.7 98.7% feature · violin
Cluster 11 30 XP_048589383.1 (NVE5412) 2.81 38.6 49.2% feature · violin
Cluster 11 31 XP_032222519.2 (NVE16297) 1.78 38.2 79.8% feature · violin
Cluster 11 32 XP_048576715.1 (NVE5546) 2.93 38.1 45.9% feature · violin
Cluster 11 33 XP_001637641.2 (NVE12172) 1.64 37.4 78.0% feature · violin
Cluster 11 34 NVE20813 not mapped 2.30 37.4 54.2% feature · violin
Cluster 11 35 NVE15793 not mapped 1.94 37.2 60.1% feature · violin
Cluster 11 36 NVE5299 not mapped 3.02 36.8 43.0% feature · violin
Cluster 11 37 NVE22473 not mapped 2.60 36.7 51.8% feature · violin
Cluster 11 38 NVE12051 not mapped 0.47 36.2 99.8% feature · violin
Cluster 11 39 NVE20682 not mapped 0.90 36.2 95.8% feature · violin
Cluster 11 40 NVE1165 not mapped 3.32 36.1 40.6% feature · violin
Cluster 11 41 NVE22411 not mapped 1.38 35.8 93.5% feature · violin
Cluster 11 42 NVE11578 not mapped 1.04 35.4 92.8% feature · violin
Cluster 11 43 NVE45 not mapped 0.58 35.4 99.0% feature · violin
Cluster 11 44 NVE14926 not mapped 0.67 35.3 98.9% feature · violin
Cluster 11 45 XP_032237477.1 (NVE24738) 1.72 35.3 81.6% feature · violin
Cluster 11 46 NVE25369 not mapped 0.70 35.1 98.8% feature · violin
Cluster 11 47 NVE22400 not mapped 1.59 34.9 64.6% feature · violin
Cluster 11 48 NVE6308 not mapped 2.58 34.7 43.6% feature · violin
Cluster 11 49 NVE2942 not mapped 0.69 34.6 98.3% feature · violin
Cluster 11 50 NVE3157 not mapped 2.10 34.5 50.3% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 41 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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