Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE25859 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 24 1 NVE4451 not mapped 8.84 28.1 79.1% feature · violin
Cluster 24 2 NVE12326 not mapped 7.84 23.9 67.6% feature · violin
Cluster 24 3 NVE15760 not mapped 7.87 22.7 65.1% feature · violin
Cluster 24 4 NVE20094 not mapped 8.91 21.3 60.0% feature · violin
Cluster 24 5 NVE1907 not mapped 2.18 19.9 95.2% feature · violin
Cluster 24 6 NVE19066 not mapped 8.82 19.8 55.4% feature · violin
Cluster 24 7 XP_032238357.2 (NVE23143) 1.26 19.3 98.4% feature · violin
Cluster 24 8 NVE9066 not mapped 6.10 18.6 53.3% feature · violin
Cluster 24 9 NVE6677 not mapped 3.44 18.6 64.6% feature · violin
Cluster 24 10 NVE20565 not mapped 3.43 17.6 59.5% feature · violin
Cluster 24 11 NVE16591 not mapped 5.51 17.4 51.7% feature · violin
Cluster 24 12 NVE20630 not mapped 3.26 17.4 62.1% feature · violin
Cluster 24 13 NVE1143 not mapped 5.94 16.7 49.7% feature · violin
Cluster 24 14 NVE3463 not mapped 2.21 16.2 69.2% feature · violin
Cluster 24 15 NVE12036 not mapped 6.90 15.9 45.1% feature · violin
Cluster 24 16 NVE3867 not mapped 8.50 15.8 44.4% feature · violin
Cluster 24 17 NVE5662 not mapped 2.73 15.2 56.8% feature · violin
Cluster 24 18 NVE15969 not mapped 2.13 15.0 71.3% feature · violin
Cluster 24 19 NVE10853 not mapped 3.19 15.0 52.0% feature · violin
Cluster 24 20 NVE2234 not mapped 4.47 14.8 44.6% feature · violin
Cluster 24 21 NVE17615 not mapped 7.18 14.7 41.4% feature · violin
Cluster 24 22 NVE14802 not mapped 6.07 14.2 40.7% feature · violin
Cluster 24 23 NVE25859 not mapped 6.04 14.2 40.5% feature · violin
Cluster 24 24 NVE13685 not mapped 4.29 13.9 45.5% feature · violin
Cluster 24 25 NVE23972 not mapped 2.47 13.8 55.4% feature · violin
Cluster 24 26 NVE1555 not mapped 7.13 13.7 40.0% feature · violin
Cluster 24 27 XP_001633226.2 (NVE23271) 2.25 13.5 56.8% feature · violin
Cluster 24 28 NVE9787 not mapped 2.10 13.4 96.8% feature · violin
Cluster 24 29 XP_048585159.1 (NVE19156) 5.97 13.4 38.6% feature · violin
Cluster 24 30 NVE12842 not mapped 2.08 13.3 82.8% feature · violin
Cluster 24 31 NVE23145 not mapped 1.86 12.9 89.2% feature · violin
Cluster 24 32 NVE3143 not mapped 1.04 12.9 89.4% feature · violin
Cluster 24 33 NVE5222 not mapped 4.77 12.6 37.7% feature · violin
Cluster 24 34 NVE7526 not mapped 7.11 12.3 35.2% feature · violin
Cluster 24 35 NVE24697 not mapped 1.92 12.0 56.3% feature · violin
Cluster 24 36 NVE6890 not mapped 1.83 12.0 69.7% feature · violin
Cluster 24 37 NVE15435 not mapped 2.24 11.9 62.5% feature · violin
Cluster 24 38 NVE13346 not mapped 0.76 11.7 97.7% feature · violin
Cluster 24 39 NVE2618 not mapped 1.15 11.7 95.6% feature · violin
Cluster 24 40 NVE10019 not mapped 1.29 11.6 78.9% feature · violin
Cluster 24 41 NVE13315 not mapped 1.02 11.5 80.7% feature · violin
Cluster 24 42 XP_032220200.2 (NVE3918) 1.87 11.5 69.9% feature · violin
Cluster 24 43 NVE13257 not mapped 1.01 11.2 93.6% feature · violin
Cluster 24 44 XP_001631628.1 (NVE26198) 2.49 11.0 42.5% feature · violin
Cluster 24 45 XP_001637641.2 (NVE12172) 1.41 11.0 74.5% feature · violin
Cluster 24 46 XP_032231493.2 (NVE7206) 2.74 10.9 39.5% feature · violin
Cluster 24 47 NVE23813 not mapped 1.04 10.8 92.4% feature · violin
Cluster 24 48 NVE12848 not mapped 1.47 10.8 63.4% feature · violin
Cluster 24 49 NVE10283 not mapped 1.98 10.7 59.3% feature · violin
Cluster 24 50 NVE2343 not mapped 1.69 10.7 60.5% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 43 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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