Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE2668 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 19 1 NVE9787 not mapped 2.99 14.5 99.0% feature · violin
Cluster 19 2 NVE2876 not mapped 3.66 14.4 81.2% feature · violin
Cluster 19 3 NVE2187 not mapped 11.93 13.6 57.1% feature · violin
Cluster 19 4 NVE23561 not mapped 5.44 13.4 59.7% feature · violin
Cluster 19 5 XP_032220568.2 (NVE2189) 12.03 12.9 53.9% feature · violin
Cluster 19 6 NVE4486 not mapped 11.46 12.7 53.4% feature · violin
Cluster 19 7 XP_032238357.2 (NVE23143) 1.34 12.7 99.0% feature · violin
Cluster 19 8 NVE21647 not mapped 10.34 12.5 52.4% feature · violin
Cluster 19 9 NVE21761 not mapped 7.15 12.2 51.8% feature · violin
Cluster 19 10 NVE4901 not mapped 11.22 12.1 50.8% feature · violin
Cluster 19 11 NVE18269 not mapped 8.61 11.9 50.8% feature · violin
Cluster 19 12 NVE17090 not mapped 11.61 11.7 49.2% feature · violin
Cluster 19 13 NVE814 not mapped 4.32 10.9 52.4% feature · violin
Cluster 19 14 NVE3143 not mapped 1.37 10.8 86.4% feature · violin
Cluster 19 15 NVE14556 not mapped 10.87 10.7 45.0% feature · violin
Cluster 19 16 NVE18268 not mapped 8.83 10.6 45.0% feature · violin
Cluster 19 17 NVE2188 not mapped 11.65 10.4 43.5% feature · violin
Cluster 19 18 NVE2814 not mapped 9.32 10.2 42.9% feature · violin
Cluster 19 19 NVE18733 not mapped 5.94 10.1 44.0% feature · violin
Cluster 19 20 NVE13758 not mapped 3.99 9.9 55.0% feature · violin
Cluster 19 21 NVE4897 not mapped 11.44 9.7 40.8% feature · violin
Cluster 19 22 NVE13110 not mapped 4.41 9.7 45.5% feature · violin
Cluster 19 23 NVE17084 not mapped 2.27 9.7 72.8% feature · violin
Cluster 19 24 NVE15435 not mapped 2.55 9.7 70.7% feature · violin
Cluster 19 25 NVE23049 not mapped 11.39 9.6 40.3% feature · violin
Cluster 19 26 NVE20235 not mapped 3.59 9.4 51.3% feature · violin
Cluster 19 27 NVE12842 not mapped 2.14 9.3 83.8% feature · violin
Cluster 19 28 NVE14517 not mapped 7.64 9.3 39.3% feature · violin
Cluster 19 29 NVE15943 not mapped 2.14 9.1 91.1% feature · violin
Cluster 19 30 NVE14660 not mapped 10.44 9.0 37.7% feature · violin
Cluster 19 31 NVE17939 not mapped 1.70 8.7 72.8% feature · violin
Cluster 19 32 XP_001637641.2 (NVE12172) 1.72 8.5 74.9% feature · violin
Cluster 19 33 NVE25547 not mapped 4.72 8.5 38.7% feature · violin
Cluster 19 34 NVE23459 not mapped 7.00 8.5 36.6% feature · violin
Cluster 19 35 NVE10958 not mapped 8.33 8.4 35.6% feature · violin
Cluster 19 36 NVE2375 not mapped 7.99 8.4 35.6% feature · violin
Cluster 19 37 NVE18688 not mapped 5.29 8.3 37.2% feature · violin
Cluster 19 38 NVE13659 not mapped 10.86 8.2 34.6% feature · violin
Cluster 19 39 NVE10283 not mapped 2.28 8.2 61.3% feature · violin
Cluster 19 40 XP_001639372.3 (NVE3919) 2.39 8.1 55.0% feature · violin
Cluster 19 41 XP_001621520.3 (NVE1122) 8.07 8.0 34.0% feature · violin
Cluster 19 42 NVE7846 not mapped 2.16 8.0 53.4% feature · violin
Cluster 19 43 NVE6010 not mapped 2.19 7.9 61.8% feature · violin
Cluster 19 44 NVE2668 not mapped 3.92 7.8 37.2% feature · violin
Cluster 19 45 NVE2237 not mapped 3.62 7.7 37.7% feature · violin
Cluster 19 46 XP_032220200.2 (NVE3918) 1.79 7.7 71.7% feature · violin
Cluster 19 47 NVE20421 not mapped 2.73 7.7 46.6% feature · violin
Cluster 19 48 NVE14800 not mapped 1.08 7.7 74.3% feature · violin
Cluster 19 49 XP_048587748.1 (NVE4899) 9.06 7.6 31.9% feature · violin
Cluster 19 50 NVE1076 not mapped 0.70 7.4 89.5% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 43 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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