Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE3463 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 20 1 NVE6677 not mapped 4.14 27.2 74.8% feature · violin
Cluster 20 2 NVE4602 not mapped 7.68 27.1 64.7% feature · violin
Cluster 20 3 XP_001633226.2 (NVE23271) 2.70 20.4 65.5% feature · violin
Cluster 20 4 NVE7996 not mapped 1.68 19.7 87.2% feature · violin
Cluster 20 5 NVE10853 not mapped 3.21 18.7 54.2% feature · violin
Cluster 20 6 NVE5882 not mapped 8.53 18.2 42.6% feature · violin
Cluster 20 7 NVE3463 not mapped 2.03 17.9 67.5% feature · violin
Cluster 20 8 XP_032238357.2 (NVE23143) 0.96 17.6 98.4% feature · violin
Cluster 20 9 NVE23805 not mapped 9.41 17.4 40.7% feature · violin
Cluster 20 10 NVE5662 not mapped 2.65 17.3 55.1% feature · violin
Cluster 20 11 NVE6868 not mapped 3.81 16.9 44.4% feature · violin
Cluster 20 12 XP_032238340.2 (NVE23327) 4.86 16.5 44.7% feature · violin
Cluster 20 13 NVE2234 not mapped 4.18 16.4 41.8% feature · violin
Cluster 20 14 NVE1907 not mapped 1.47 15.9 90.5% feature · violin
Cluster 20 15 XP_032231493.2 (NVE7206) 3.12 15.4 44.6% feature · violin
Cluster 20 16 NVE20565 not mapped 2.54 15.2 48.4% feature · violin
Cluster 20 17 XP_048584370.1 (NVE6228) 2.96 14.3 41.2% feature · violin
Cluster 20 18 NVE1796 not mapped 7.57 14.1 33.2% feature · violin
Cluster 20 19 NVE20522 not mapped 6.63 13.9 33.3% feature · violin
Cluster 20 20 NVE3143 not mapped 0.98 13.8 90.2% feature · violin
Cluster 20 21 XP_048578883.1 (NVE17839) 3.95 13.8 35.9% feature · violin
Cluster 20 22 NVE4605 not mapped 5.59 13.7 34.0% feature · violin
Cluster 20 23 NVE13315 not mapped 1.04 13.7 81.4% feature · violin
Cluster 20 24 NVE13599 not mapped 3.84 13.5 36.2% feature · violin
Cluster 20 25 NVE5418 not mapped 1.51 12.9 68.9% feature · violin
Cluster 20 26 NVE16374 not mapped 7.23 12.9 30.3% feature · violin
Cluster 20 27 NVE23972 not mapped 1.95 12.8 48.1% feature · violin
Cluster 20 28 NVE13346 not mapped 0.75 12.8 98.9% feature · violin
Cluster 20 29 NVE17574 not mapped 1.18 12.7 74.7% feature · violin
Cluster 20 30 NVE23145 not mapped 1.52 12.5 86.9% feature · violin
Cluster 20 31 NVE20085 not mapped 6.95 12.4 29.5% feature · violin
Cluster 20 32 NVE17678 not mapped 4.51 12.2 30.4% feature · violin
Cluster 20 33 NVE2965 not mapped 8.27 12.1 28.7% feature · violin
Cluster 20 34 NVE22002 not mapped 7.36 12.1 28.7% feature · violin
Cluster 20 35 NVE23569 not mapped 3.30 12.1 34.9% feature · violin
Cluster 20 36 NVE4525 not mapped 4.48 12.0 33.0% feature · violin
Cluster 20 37 NVE12909 not mapped 0.94 12.0 79.6% feature · violin
Cluster 20 38 NVE25759 not mapped 7.08 12.0 28.4% feature · violin
Cluster 20 39 NVE15510 not mapped 6.52 11.9 28.4% feature · violin
Cluster 20 40 NVE21527 not mapped 7.92 11.8 28.0% feature · violin
Cluster 20 41 NVE15186 not mapped 8.34 11.6 27.2% feature · violin
Cluster 20 42 NVE23844 not mapped 1.97 11.5 42.1% feature · violin
Cluster 20 43 NVE11299 not mapped 3.51 11.4 30.1% feature · violin
Cluster 20 44 NVE2618 not mapped 0.92 11.4 93.8% feature · violin
Cluster 20 45 NVE6749 not mapped 5.63 11.4 27.6% feature · violin
Cluster 20 46 NVE22589 not mapped 9.48 11.3 26.4% feature · violin
Cluster 20 47 NVE22590 not mapped 8.66 11.3 26.4% feature · violin
Cluster 20 48 XP_032222519.2 (NVE16297) 1.29 11.1 72.0% feature · violin
Cluster 20 49 NVE9443 not mapped 1.26 11.1 56.6% feature · violin
Cluster 20 50 NVE12877 not mapped 7.53 10.9 26.0% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 43 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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