Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE4417 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 6 1 NVE9976 not mapped 8.15 60.6 92.4% feature · violin
Cluster 6 2 NVE9331 not mapped 3.23 50.6 91.0% feature · violin
Cluster 6 3 NVE24152 not mapped 6.68 50.3 76.8% feature · violin
Cluster 6 4 NVE16303 not mapped 7.73 47.6 71.4% feature · violin
Cluster 6 5 NVE13894 not mapped 7.32 46.2 69.7% feature · violin
Cluster 6 6 NVE19040 not mapped 5.83 46.1 71.9% feature · violin
Cluster 6 7 NVE9332 not mapped 6.86 45.9 69.7% feature · violin
Cluster 6 8 NVE3845 not mapped 5.99 44.0 68.5% feature · violin
Cluster 6 9 NVE5471 not mapped 5.80 42.2 65.1% feature · violin
Cluster 6 10 NVE19597 not mapped 6.17 42.0 64.3% feature · violin
Cluster 6 11 NVE17479 not mapped 5.79 42.0 64.6% feature · violin
Cluster 6 12 NVE21290 not mapped 1.85 40.9 92.3% feature · violin
Cluster 6 13 NVE9725 not mapped 6.61 40.1 61.1% feature · violin
Cluster 6 14 NVE2100 not mapped 7.34 40.0 59.9% feature · violin
Cluster 6 15 XP_048579977.1 (NVE25301) 3.35 39.4 71.6% feature · violin
Cluster 6 16 NVE18870 not mapped 7.80 39.2 58.7% feature · violin
Cluster 6 17 NVE2937 not mapped 3.75 38.9 68.3% feature · violin
Cluster 6 18 NVE22167 not mapped 5.81 38.6 59.4% feature · violin
Cluster 6 19 NVE5193 not mapped 2.48 38.5 79.4% feature · violin
Cluster 6 20 NVE2219 not mapped 2.81 38.4 76.6% feature · violin
Cluster 6 21 NVE23203 not mapped 3.96 38.3 64.5% feature · violin
Cluster 6 22 NVE8767 not mapped 1.92 38.0 88.8% feature · violin
Cluster 6 23 NVE6863 not mapped 6.21 37.8 58.5% feature · violin
Cluster 6 24 XP_032233324.1 (NVE4417) 6.67 37.3 56.2% feature · violin
Cluster 6 25 NVE25276 not mapped 7.84 37.2 55.4% feature · violin
Cluster 6 26 NVE19039 not mapped 4.73 36.8 60.9% feature · violin
Cluster 6 27 NVE13177 not mapped 3.16 36.6 69.8% feature · violin
Cluster 6 28 XP_048577371.1 (NVE7535) 4.97 36.4 58.0% feature · violin
Cluster 6 29 NVE5009 not mapped 2.24 36.1 80.5% feature · violin
Cluster 6 30 NVE12909 not mapped 1.80 36.0 88.4% feature · violin
Cluster 6 31 NVE14804 not mapped 6.19 35.8 54.4% feature · violin
Cluster 6 32 NVE26074 not mapped 1.45 35.5 91.6% feature · violin
Cluster 6 33 NVE14991 not mapped 5.56 35.4 55.3% feature · violin
Cluster 6 34 NVE11676 not mapped 1.92 35.2 82.7% feature · violin
Cluster 6 35 NVE21881 not mapped 4.06 35.0 59.3% feature · violin
Cluster 6 36 NVE11919 not mapped 3.08 34.9 66.5% feature · violin
Cluster 6 37 NVE24992 not mapped 3.03 34.9 65.1% feature · violin
Cluster 6 38 NVE18951 not mapped 6.81 34.8 52.5% feature · violin
Cluster 6 39 NVE10888 not mapped 2.30 34.8 73.7% feature · violin
Cluster 6 40 NVE20437 not mapped 4.93 34.8 55.1% feature · violin
Cluster 6 41 NVE23990 not mapped 2.62 34.7 70.7% feature · violin
Cluster 6 42 XP_032228155.2 (NVE12762) 3.04 34.4 66.9% feature · violin
Cluster 6 43 NVE5212 not mapped 6.52 34.2 51.7% feature · violin
Cluster 6 44 NVE12148 not mapped 2.55 34.1 71.1% feature · violin
Cluster 6 45 NVE25371 not mapped 2.60 34.0 69.1% feature · violin
Cluster 6 46 NVE4299 not mapped 2.14 33.9 77.3% feature · violin
Cluster 6 47 NVE9650 not mapped 1.88 33.2 82.2% feature · violin
Cluster 6 48 NVE2102 not mapped 6.08 32.9 50.1% feature · violin
Cluster 6 49 NVE3844 not mapped 5.03 32.7 51.7% feature · violin
Cluster 6 50 NVE15970 not mapped 2.08 32.7 78.3% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 46 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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