Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE6118 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 8 1 XP_048575370.1 (NVE11897) 8.89 47.9 73.4% feature · violin
Cluster 8 2 NVE5570 not mapped 3.55 41.6 76.5% feature · violin
Cluster 8 3 NVE11652 not mapped 3.19 39.6 75.2% feature · violin
Cluster 8 4 NVE14526 not mapped 4.39 39.1 66.8% feature · violin
Cluster 8 5 NVE24374 not mapped 8.08 37.5 57.3% feature · violin
Cluster 8 6 NVE5003 not mapped 2.56 33.9 78.0% feature · violin
Cluster 8 7 NVE12086 not mapped 7.56 33.8 51.7% feature · violin
Cluster 8 8 NVE5400 not mapped 1.78 33.4 87.0% feature · violin
Cluster 8 9 NVE17554 not mapped 5.47 32.6 51.6% feature · violin
Cluster 8 10 NVE24513 not mapped 5.93 30.9 48.3% feature · violin
Cluster 8 11 NVE7116 not mapped 4.89 30.8 49.5% feature · violin
Cluster 8 12 NVE21150 not mapped 3.13 30.8 62.0% feature · violin
Cluster 8 13 NVE25544 not mapped 2.26 30.4 72.6% feature · violin
Cluster 8 14 NVE4251 not mapped 1.84 30.0 76.7% feature · violin
Cluster 8 15 NVE20118 not mapped 7.60 28.9 44.2% feature · violin
Cluster 8 16 XP_032239982.1 (NVE20438) 3.17 28.9 54.8% feature · violin
Cluster 8 17 XP_001639078.3 (NVE5421) 3.86 28.8 49.9% feature · violin
Cluster 8 18 NVE11962 not mapped 2.14 28.7 72.1% feature · violin
Cluster 8 19 XP_032237799.1 (NVE24170) 6.02 28.5 44.3% feature · violin
Cluster 8 20 NVE8113 not mapped 3.70 27.7 48.9% feature · violin
Cluster 8 21 NVE18054 not mapped 3.87 27.1 46.6% feature · violin
Cluster 8 22 XP_001635435.2 (NVE18506) 1.32 26.9 81.4% feature · violin
Cluster 8 23 NVE22054 not mapped 6.52 26.5 40.9% feature · violin
Cluster 8 24 XP_001635037.1 (NVE19830) 2.11 26.5 60.7% feature · violin
Cluster 8 25 NVE25610 not mapped 6.43 26.0 40.1% feature · violin
Cluster 8 26 NVE25541 not mapped 1.22 25.7 79.5% feature · violin
Cluster 8 27 NVE2195 not mapped 3.84 25.7 46.1% feature · violin
Cluster 8 28 NVE18990 not mapped 1.72 25.6 71.0% feature · violin
Cluster 8 29 NVE12148 not mapped 2.15 25.5 59.5% feature · violin
Cluster 8 30 XP_001640436.1 (NVE23956) 2.62 25.4 54.0% feature · violin
Cluster 8 31 NVE13986 not mapped 4.41 25.4 41.5% feature · violin
Cluster 8 32 NVE2944 not mapped 5.87 25.1 39.2% feature · violin
Cluster 8 33 NVE18733 not mapped 5.77 25.0 39.2% feature · violin
Cluster 8 34 NVE18971 not mapped 3.37 24.9 44.7% feature · violin
Cluster 8 35 XP_032227228.2 (NVE14737) 2.11 24.8 59.9% feature · violin
Cluster 8 36 NVE22697 not mapped 4.88 24.7 40.2% feature · violin
Cluster 8 37 NVE19724 not mapped 2.08 24.3 58.4% feature · violin
Cluster 8 38 XP_001637260.3 (NVE13522) 1.79 24.1 64.5% feature · violin
Cluster 8 39 NVE12243 not mapped 1.86 24.0 62.2% feature · violin
Cluster 8 40 NVE22755 not mapped 5.76 24.0 37.7% feature · violin
Cluster 8 41 NVE235 not mapped 5.43 24.0 38.1% feature · violin
Cluster 8 42 NVE14440 not mapped 5.63 23.9 37.9% feature · violin
Cluster 8 43 NVE7441 not mapped 1.63 23.9 68.8% feature · violin
Cluster 8 44 NVE1939 not mapped 1.47 23.9 99.4% feature · violin
Cluster 8 45 NVE8348 not mapped 4.61 23.7 38.7% feature · violin
Cluster 8 46 NVE17311 not mapped 1.75 23.7 65.8% feature · violin
Cluster 8 47 NVE6118 not mapped 2.27 23.5 52.2% feature · violin
Cluster 8 48 NVE6393 not mapped 1.89 23.5 63.2% feature · violin
Cluster 8 49 NVE20970 not mapped 1.83 23.1 58.1% feature · violin
Cluster 8 50 NVE23962 not mapped 1.57 23.1 68.2% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 41 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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