Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NVE8536 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 13 1 NVE6677 not mapped 5.52 68.3 82.8% feature · violin
Cluster 13 2 NVE23972 not mapped 4.02 55.4 73.0% feature · violin
Cluster 13 3 XP_001633226.2 (NVE23271) 3.65 53.9 72.5% feature · violin
Cluster 13 4 NVE24203 not mapped 5.27 46.1 55.2% feature · violin
Cluster 13 5 NVE1907 not mapped 2.14 46.0 94.3% feature · violin
Cluster 13 6 NVE429 not mapped 5.45 42.8 50.5% feature · violin
Cluster 13 7 NVE6335 not mapped 2.26 40.5 67.9% feature · violin
Cluster 13 8 XP_032226875.2 (NVE15559) 4.42 35.6 43.8% feature · violin
Cluster 13 9 XP_032231412.1 (NVE7318) 2.83 34.6 53.2% feature · violin
Cluster 13 10 XP_032238357.2 (NVE23143) 0.95 34.5 98.9% feature · violin
Cluster 13 11 NVE8064 not mapped 4.72 34.4 43.0% feature · violin
Cluster 13 12 NVE7996 not mapped 1.40 33.9 82.2% feature · violin
Cluster 13 13 NVE8534 not mapped 5.04 33.8 40.1% feature · violin
Cluster 13 14 NVE10019 not mapped 1.64 33.6 80.9% feature · violin
Cluster 13 15 NVE2618 not mapped 1.35 33.5 95.3% feature · violin
Cluster 13 16 NVE5662 not mapped 2.63 33.0 50.7% feature · violin
Cluster 13 17 NVE18721 not mapped 1.88 32.7 63.3% feature · violin
Cluster 13 18 XP_032220141.1 (NVE4682) 4.47 31.1 38.0% feature · violin
Cluster 13 19 NVE19591 not mapped 1.52 30.4 68.6% feature · violin
Cluster 13 20 XP_048579574.1 (NVE3630) 5.79 30.2 35.2% feature · violin
Cluster 13 21 NVE23819 not mapped 1.31 30.0 72.2% feature · violin
Cluster 13 22 NVE12842 not mapped 1.97 29.7 75.1% feature · violin
Cluster 13 23 NVE15017 not mapped 2.36 29.6 48.2% feature · violin
Cluster 13 24 NVE8536 not mapped 5.38 29.3 34.3% feature · violin
Cluster 13 25 XP_048584370.1 (NVE6228) 3.23 29.0 39.3% feature · violin
Cluster 13 26 NVE2476 not mapped 5.08 28.6 33.9% feature · violin
Cluster 13 27 NVE230 not mapped 1.21 28.0 79.2% feature · violin
Cluster 13 28 NVE10899 not mapped 3.65 27.2 35.0% feature · violin
Cluster 13 29 XP_032231493.2 (NVE7206) 2.91 26.9 38.4% feature · violin
Cluster 13 30 NVE20565 not mapped 2.55 26.8 41.5% feature · violin
Cluster 13 31 NVE15969 not mapped 1.62 26.7 63.4% feature · violin
Cluster 13 32 NVE23640 not mapped 5.83 26.5 30.7% feature · violin
Cluster 13 33 NVE16355 not mapped 5.45 26.1 31.3% feature · violin
Cluster 13 34 XP_032222903.1 (NVE12889) 3.85 26.1 32.7% feature · violin
Cluster 13 35 NVE20919 not mapped 5.17 26.0 30.7% feature · violin
Cluster 13 36 NVE930 not mapped 3.88 26.0 32.8% feature · violin
Cluster 13 37 XP_032228671.1 (NVE11988) 6.36 25.8 29.7% feature · violin
Cluster 13 38 NVE9243 not mapped 3.75 25.6 32.8% feature · violin
Cluster 13 39 NVE8535 not mapped 4.29 25.5 31.2% feature · violin
Cluster 13 40 NVE9230 not mapped 4.06 25.4 31.5% feature · violin
Cluster 13 41 NVE19147 not mapped 1.79 25.3 49.2% feature · violin
Cluster 13 42 XP_001637641.2 (NVE12172) 1.39 25.1 73.2% feature · violin
Cluster 13 43 NVE19082 not mapped 2.68 25.0 36.9% feature · violin
Cluster 13 44 NVE18455 not mapped 2.05 25.0 44.2% feature · violin
Cluster 13 45 NVE17084 not mapped 1.32 24.9 71.1% feature · violin
Cluster 13 46 NVE24272 not mapped 3.27 24.7 32.7% feature · violin
Cluster 13 47 NVE15435 not mapped 1.93 24.3 58.0% feature · violin
Cluster 13 48 NVE9410 not mapped 1.21 24.3 64.1% feature · violin
Cluster 13 49 NVE25571 not mapped 1.51 24.1 55.7% feature · violin
Cluster 13 50 NVE7859 not mapped 3.24 23.6 32.0% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 39 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

TOP