Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Ectoderm25986 Secretory Progenitor2713 Endoderm2055 Unannotated1542 Mesoderm1489 Cnidocytes1471 Neuronal730 Gland Cells564
Cell type Rank Gene log2 FC Score % detected Plot
Cnidocytes 1 NV2.10686 8.90 53.7 84.0% feature · violin
Cnidocytes 2 NV2.13045 8.88 49.2 75.9% feature · violin
Cnidocytes 3 BRN3-like-1 6.67 48.5 75.9% feature · violin
Cnidocytes 4 NV2.11720 8.62 47.4 73.3% feature · violin
Cnidocytes 5 NFH-like-4 7.98 45.5 71.0% feature · violin
Cnidocytes 6 NV2.18211 4.77 45.1 74.5% feature · violin
Cnidocytes 7 PPIB-like-5 9.81 44.9 69.2% feature · violin
Cnidocytes 8 FKBP2-like-1 9.56 44.6 68.9% feature · violin
Cnidocytes 9 DKK3-like-11 8.27 44.4 68.7% feature · violin
Cnidocytes 10 OPSD2-like-3 6.75 44.3 69.7% feature · violin
Cnidocytes 11 MARCO-like-2 7.11 44.0 69.7% feature · violin
Cnidocytes 12 EVA1C-like-3 8.91 43.9 68.0% feature · violin
Cnidocytes 13 ZNF845 7.31 43.1 67.2% feature · violin
Cnidocytes 14 NV2.18394 6.13 42.9 67.7% feature · violin
Cnidocytes 15 Ncol6 7.97 42.5 67.4% feature · violin
Ectoderm 1 NV2.8285 2.82 91.5 91.1% feature · violin
Ectoderm 2 CD63-like-12 2.34 86.7 85.9% feature · violin
Ectoderm 3 NV2.6591 2.26 80.4 89.3% feature · violin
Ectoderm 4 Nv4 2.66 80.3 81.7% feature · violin
Ectoderm 5 NV2.9154 2.63 79.1 93.2% feature · violin
Ectoderm 6 NV2.18050 2.36 76.2 85.7% feature · violin
Ectoderm 7 NV2.2154 1.92 75.1 81.1% feature · violin
Ectoderm 8 SON-like-3 1.68 73.5 87.5% feature · violin
Ectoderm 9 CANB-like-2 1.62 72.9 83.0% feature · violin
Ectoderm 10 PCR7-like-1 1.85 71.6 87.9% feature · violin
Ectoderm 11 THIO-like-8 0.98 71.4 97.6% feature · violin
Ectoderm 12 NV2.12310 1.71 65.6 86.1% feature · violin
Ectoderm 13 Sox3 1.67 63.5 82.5% feature · violin
Ectoderm 14 NV2.16537 1.84 61.6 71.4% feature · violin
Ectoderm 15 NV2.15796 2.19 61.4 59.3% feature · violin
Endoderm 1 FGF8A 3.70 51.6 80.9% feature · violin
Endoderm 2 NV2.1052 2.67 45.7 83.8% feature · violin
Endoderm 3 Brachyury 3.42 42.4 66.2% feature · violin
Endoderm 4 FoxA 6.20 42.2 56.7% feature · violin
Endoderm 5 RNF43 2.97 41.4 68.7% feature · violin
Endoderm 6 TYB12-like-1 1.86 41.3 95.4% feature · violin
Endoderm 7 Wnt4 2.95 38.4 65.5% feature · violin
Endoderm 8 DMRT-E 1.92 38.4 82.7% feature · violin
Endoderm 9 FoxB 5.29 37.0 50.9% feature · violin
Endoderm 10 Nanos2 1.58 33.7 81.4% feature · violin
Endoderm 11 MELC5 1.61 30.1 72.2% feature · violin
Endoderm 12 LRWa3-R.204 2.31 28.6 51.0% feature · violin
Endoderm 13 NUD20-like-1 4.68 27.6 38.3% feature · violin
Endoderm 14 NV2.639 1.14 25.9 82.5% feature · violin
Endoderm 15 CH10-like-1 0.92 25.9 94.2% feature · violin
Gland Cells 1 NV2.3425 10.85 39.3 96.5% feature · violin
Gland Cells 2 FKB14-like-1 11.04 37.9 93.3% feature · violin
Gland Cells 3 ALK-like-1 10.17 37.2 91.3% feature · violin
Gland Cells 4 NV2.22820 9.65 36.9 90.8% feature · violin
Gland Cells 5 NV2.21610 9.97 35.6 87.4% feature · violin
Gland Cells 6 NV2.7431 8.36 34.6 85.3% feature · violin
Gland Cells 7 creb-like2 6.09 34.4 87.8% feature · violin
Gland Cells 8 SPEE-like-2 10.31 34.3 84.2% feature · violin
Gland Cells 9 NV2.18211 5.51 34.0 87.9% feature · violin
Gland Cells 10 CD151-like-2 6.54 33.6 84.8% feature · violin
Gland Cells 11 ID4-like-2 6.59 33.3 84.8% feature · violin
Gland Cells 12 AHNK-like-9 10.06 33.0 81.0% feature · violin
Gland Cells 13 NV2.3667 9.69 31.9 78.5% feature · violin
Gland Cells 14 NOT2-like-4 9.82 31.6 77.7% feature · violin
Gland Cells 15 Mucin 10.34 31.4 77.0% feature · violin
Mesoderm 1 NV2.6264 6.90 62.8 99.4% feature · violin
Mesoderm 2 COTL1-like-1 3.75 55.3 94.8% feature · violin
Mesoderm 3 SPRC-like-10 8.88 54.7 83.9% feature · violin
Mesoderm 4 MCPI-like-1 4.21 54.5 92.1% feature · violin
Mesoderm 5 Perl 8.32 51.3 78.8% feature · violin
Mesoderm 6 VKT2-like-1 8.79 51.0 78.2% feature · violin
Mesoderm 7 TICN2-like-1 5.04 48.8 78.8% feature · violin
Mesoderm 8 NV2.13117 5.12 48.5 78.8% feature · violin
Mesoderm 9 CO4A2-like-1 7.73 47.6 73.4% feature · violin
Mesoderm 10 ZF-C3H1 4.36 47.5 78.4% feature · violin
Mesoderm 11 Galaxin 7.39 47.2 73.5% feature · violin
Mesoderm 12 EFHD2-like-1 2.42 45.5 92.1% feature · violin
Mesoderm 13 MMPi 6.83 44.9 69.9% feature · violin
Mesoderm 14 FRIS-like-8 7.29 43.8 68.0% feature · violin
Mesoderm 15 NV2.23418 6.69 43.5 67.7% feature · violin
Neuronal 1 CD151-like-2 6.84 40.4 89.3% feature · violin
Neuronal 2 THIO-like-1 6.05 40.3 91.1% feature · violin
Neuronal 3 KAPR-like-14 5.17 40.3 91.0% feature · violin
Neuronal 4 GBGE-like-1 5.90 38.9 87.5% feature · violin
Neuronal 5 SEGN-like-1 7.96 38.6 84.0% feature · violin
Neuronal 6 AshA 8.03 35.7 77.8% feature · violin
Neuronal 7 P5I11-like-1 3.58 31.6 78.4% feature · violin
Neuronal 8 SH3G3-like-3 7.80 31.0 67.7% feature · violin
Neuronal 9 DCX-like-1 3.46 30.5 77.3% feature · violin
Neuronal 10 NV2.13752 10.08 30.3 65.5% feature · violin
Neuronal 11 INSM1-like-1 4.93 30.0 70.1% feature · violin
Neuronal 12 Tpm3 5.31 29.7 67.1% feature · violin
Neuronal 13 GLWG peptide 9.60 29.6 64.1% feature · violin
Neuronal 14 NV2.3318 8.31 29.4 64.2% feature · violin
Neuronal 15 YPEL1-like-1 3.43 29.2 74.5% feature · violin
Secretory Progenitor 1 NV2.13863 3.59 74.6 97.9% feature · violin
Secretory Progenitor 2 SoxC 3.96 63.1 83.3% feature · violin
Secretory Progenitor 3 NV2.16803 1.72 58.0 97.6% feature · violin
Secretory Progenitor 4 NV2.9336 3.70 52.4 69.7% feature · violin
Secretory Progenitor 5 MARH1-like-1 4.33 50.1 62.6% feature · violin
Secretory Progenitor 6 SoxB.2 3.18 43.2 60.4% feature · violin
Secretory Progenitor 7 Myc3 4.33 43.1 53.7% feature · violin
Secretory Progenitor 8 CIRBA-like-1 1.28 38.4 87.7% feature · violin
Secretory Progenitor 9 NV2.9843 1.80 38.2 73.8% feature · violin
Secretory Progenitor 10 CNTN6-like-1 4.48 37.7 46.7% feature · violin
Secretory Progenitor 11 NV2.23233 2.21 37.1 62.0% feature · violin
Secretory Progenitor 12 CDN1A-like-1 2.51 36.7 60.7% feature · violin
Secretory Progenitor 13 NV2.14259 3.80 36.2 46.6% feature · violin
Secretory Progenitor 14 Neurogenin1 6.54 35.0 41.1% feature · violin
Secretory Progenitor 15 NDKB-like-2 0.79 34.6 96.6% feature · violin
Unannotated 1 NV2.3010 4.12 54.2 95.3% feature · violin
Unannotated 2 NV2.3269 4.60 53.1 88.9% feature · violin
Unannotated 3 NV2.9829 4.34 52.7 96.8% feature · violin
Unannotated 4 ACAP2-like-1 3.79 51.2 91.1% feature · violin
Unannotated 5 Actin6 2.40 50.6 99.5% feature · violin
Unannotated 6 VKT4-like-1 2.90 50.5 95.1% feature · violin
Unannotated 7 NV2.3918 4.32 50.2 84.0% feature · violin
Unannotated 8 FGF8A 3.85 50.0 88.5% feature · violin
Unannotated 9 ACTC-like-6 2.31 49.6 99.8% feature · violin
Unannotated 10 WLS-like-1 3.13 48.3 88.8% feature · violin
Unannotated 11 FGFa1 3.75 47.7 88.5% feature · violin
Unannotated 12 VENT1-like-1 2.64 47.6 96.6% feature · violin
Unannotated 13 HMCN2-like-8 3.79 47.0 81.7% feature · violin
Unannotated 14 FOSX-like-4 3.87 45.4 78.1% feature · violin
Unannotated 15 ACTB-like-4 1.99 45.3 99.2% feature · violin
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