Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Ectoderm25986 Secretory Progenitor2713 Endoderm2055 Unannotated1542 Mesoderm1489 Cnidocytes1471 Neuronal730 Gland Cells564

Showing the cell type that CRIP1-like-1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Ectoderm 1 XP_048577623.1 (NV2.8285) 2.82 91.5 91.1% feature · violin
Ectoderm 2 CD63-like-12 not mapped 2.34 86.7 85.9% feature · violin
Ectoderm 3 XP_001628339.1 (NV2.6591) 2.26 80.4 89.3% feature · violin
Ectoderm 4 Nv4 not mapped 2.66 80.3 81.7% feature · violin
Ectoderm 5 XP_048577262.1 (NV2.9154) 2.63 79.1 93.2% feature · violin
Ectoderm 6 XP_001641234.1 (NV2.18050) 2.36 76.2 85.7% feature · violin
Ectoderm 7 NV2.2154 not mapped 1.92 75.1 81.1% feature · violin
Ectoderm 8 SON-like-3 not mapped 1.68 73.5 87.5% feature · violin
Ectoderm 9 CANB-like-2 not mapped 1.62 72.9 83.0% feature · violin
Ectoderm 10 PCR7-like-1 not mapped 1.85 71.6 87.9% feature · violin
Ectoderm 11 THIO-like-8 not mapped 0.98 71.4 97.6% feature · violin
Ectoderm 12 NV2.12310 not mapped 1.71 65.6 86.1% feature · violin
Ectoderm 13 Sox3 not mapped 1.67 63.5 82.5% feature · violin
Ectoderm 14 XP_048583089.1 (NV2.16537) 1.84 61.6 71.4% feature · violin
Ectoderm 15 XP_001631379.2 (NV2.15796) 2.19 61.4 59.3% feature · violin
Ectoderm 16 Actin6 not mapped 1.74 61.1 95.1% feature · violin
Ectoderm 17 XP_048588588.1 (NV2.22717) 1.57 60.6 76.8% feature · violin
Ectoderm 18 XP_001627227.1 (NV2.13764) 1.22 60.5 92.3% feature · violin
Ectoderm 19 LAMA2-like-5 not mapped 1.77 59.5 66.9% feature · violin
Ectoderm 20 Calmodulin not mapped 1.28 59.2 96.4% feature · violin
Ectoderm 21 MLC2-like-7 not mapped 1.80 59.1 64.1% feature · violin
Ectoderm 22 NV2.8570 not mapped 0.94 57.4 99.9% feature · violin
Ectoderm 23 NV2.15494 not mapped 1.49 57.4 79.6% feature · violin
Ectoderm 24 NV2.2655 not mapped 1.39 57.1 77.2% feature · violin
Ectoderm 25 CSRP1-like-3 not mapped 1.20 56.9 88.2% feature · violin
Ectoderm 26 PAO1-like-4 not mapped 1.72 56.5 64.3% feature · violin
Ectoderm 27 XP_048590519.1 (NV2.6574) 2.07 56.3 61.0% feature · violin
Ectoderm 28 ACTB-like-4 not mapped 1.56 55.8 95.2% feature · violin
Ectoderm 29 CALM-like-29 not mapped 1.78 54.8 59.5% feature · violin
Ectoderm 30 CRIP1-like-1 not mapped 1.15 53.6 88.7% feature · violin
Ectoderm 31 MYL9-like-1 not mapped 1.27 53.3 76.9% feature · violin
Ectoderm 32 XP_032226202.2 (NV2.23636) 2.56 53.3 48.1% feature · violin
Ectoderm 33 CALU-like-8 not mapped 1.78 53.1 59.1% feature · violin
Ectoderm 34 NV2.434 not mapped 1.77 52.7 59.7% feature · violin
Ectoderm 35 DMBT1-like-28 not mapped 1.58 52.7 65.9% feature · violin
Ectoderm 36 CALL3-like-7 not mapped 1.38 52.3 72.0% feature · violin
Ectoderm 37 KIME-like-1 not mapped 0.97 52.0 91.5% feature · violin
Ectoderm 38 Ptx1 not mapped 2.30 51.9 55.8% feature · violin
Ectoderm 39 DYL1-like-1 not mapped 1.06 51.8 91.9% feature · violin
Ectoderm 40 NV2.9754 not mapped 1.88 51.6 67.0% feature · violin
Ectoderm 41 NV2.23486 not mapped 1.65 50.3 57.6% feature · violin
Ectoderm 42 TPPP2-like-1 not mapped 1.63 49.8 57.6% feature · violin
Ectoderm 43 XP_001637261.1 (NV2.22469) 1.74 49.7 54.1% feature · violin
Ectoderm 44 Hl3 not mapped 2.04 48.2 49.9% feature · violin
Ectoderm 45 ZPP-like-9 not mapped 1.76 47.8 51.8% feature · violin
Ectoderm 46 ADDA-like-4 not mapped 1.44 47.6 59.0% feature · violin
Ectoderm 47 SCRY2-like-1 not mapped 1.12 47.3 83.8% feature · violin
Ectoderm 48 NV2.21226 not mapped 1.93 47.1 48.1% feature · violin
Ectoderm 49 XP_032236363.1 (NV2.2766) 1.57 47.1 56.3% feature · violin
Ectoderm 50 XP_048589872.1 (NV2.10942) 0.85 46.5 98.9% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 37 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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