Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Ectoderm25986 Secretory Progenitor2713 Endoderm2055 Unannotated1542 Mesoderm1489 Cnidocytes1471 Neuronal730 Gland Cells564

Showing the cell type that LRWa3-R.204 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Endoderm 1 FGF8A 3.70 51.6 80.9% feature · violin
Endoderm 2 NV2.1052 2.67 45.7 83.8% feature · violin
Endoderm 3 Brachyury 3.42 42.4 66.2% feature · violin
Endoderm 4 FoxA 6.20 42.2 56.7% feature · violin
Endoderm 5 RNF43 2.97 41.4 68.7% feature · violin
Endoderm 6 TYB12-like-1 1.86 41.3 95.4% feature · violin
Endoderm 7 Wnt4 2.95 38.4 65.5% feature · violin
Endoderm 8 DMRT-E 1.92 38.4 82.7% feature · violin
Endoderm 9 FoxB 5.29 37.0 50.9% feature · violin
Endoderm 10 Nanos2 1.58 33.7 81.4% feature · violin
Endoderm 11 MELC5 1.61 30.1 72.2% feature · violin
Endoderm 12 LRWa3-R.204 2.31 28.6 51.0% feature · violin
Endoderm 13 NUD20-like-1 4.68 27.6 38.3% feature · violin
Endoderm 14 NV2.639 1.14 25.9 82.5% feature · violin
Endoderm 15 CH10-like-1 0.92 25.9 94.2% feature · violin
Endoderm 16 Nkd1-like 1.87 25.5 53.1% feature · violin
Endoderm 17 PA2-like-15 2.54 25.2 44.4% feature · violin
Endoderm 18 SPY2-like-1 1.62 25.0 56.3% feature · violin
Endoderm 19 DMX1B-like-1 2.83 25.0 41.0% feature · violin
Endoderm 20 COTL1-like-1 1.32 24.5 75.3% feature · violin
Endoderm 21 PRDX5-like-1 0.71 24.4 95.4% feature · violin
Endoderm 22 KCC4-like-1 1.73 24.4 51.0% feature · violin
Endoderm 23 A1CF-like-1 3.80 24.1 34.8% feature · violin
Endoderm 24 NV2.5679 1.32 24.0 62.8% feature · violin
Endoderm 25 SBSPO-like-1 2.06 23.6 46.7% feature · violin
Endoderm 26 NV2.24183 2.80 23.5 38.2% feature · violin
Endoderm 27 Wnt3 5.73 23.3 31.2% feature · violin
Endoderm 28 NV2.6264 1.95 23.0 62.1% feature · violin
Endoderm 29 NV2.10891 1.19 23.0 88.8% feature · violin
Endoderm 30 NV2.16313 1.47 22.8 55.3% feature · violin
Endoderm 31 TMX2-like-1 1.29 22.6 59.6% feature · violin
Endoderm 32 CYP5F-like-1 1.22 22.4 69.4% feature · violin
Endoderm 33 RLR78-like-1 2.43 22.4 37.3% feature · violin
Endoderm 34 USH2A-like-2 2.48 22.3 38.2% feature · violin
Endoderm 35 Glutathione 1.47 22.2 52.2% feature · violin
Endoderm 36 ADA1B-like-12 3.38 22.2 34.1% feature · violin
Endoderm 37 NV2.16795 1.97 22.1 44.2% feature · violin
Endoderm 38 RANG-like-1 0.95 21.9 78.2% feature · violin
Endoderm 39 CLIC3-like-1 1.83 21.8 42.2% feature · violin
Endoderm 40 NV2.13863 0.94 21.6 84.5% feature · violin
Endoderm 41 TAA7H-like-1 1.65 21.5 45.1% feature · violin
Endoderm 42 NV2.24815 0.91 21.3 83.5% feature · violin
Endoderm 43 SDC-like-4 0.70 21.2 93.9% feature · violin
Endoderm 44 MBNL3-like-1 0.99 21.2 75.7% feature · violin
Endoderm 45 NV2.4988 1.42 21.2 51.6% feature · violin
Endoderm 46 PPR27-like-12 1.30 21.1 58.3% feature · violin
Endoderm 47 NIP7-like-1 1.00 21.1 71.5% feature · violin
Endoderm 48 LMX1B-like-1 3.31 21.1 31.5% feature · violin
Endoderm 49 NV2.4163 3.15 21.0 32.2% feature · violin
Endoderm 50 NV2.12191 2.73 21.0 34.1% feature · violin
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