Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Ectoderm25986 Secretory Progenitor2713 Endoderm2055 Unannotated1542 Mesoderm1489 Cnidocytes1471 Neuronal730 Gland Cells564

Showing the cell type that NV2.16795 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Endoderm 1 FGF8A not mapped 3.70 51.6 80.9% feature · violin
Endoderm 2 NV2.1052 not mapped 2.67 45.7 83.8% feature · violin
Endoderm 3 Brachyury not mapped 3.42 42.4 66.2% feature · violin
Endoderm 4 FoxA not mapped 6.20 42.2 56.7% feature · violin
Endoderm 5 RNF43 not mapped 2.97 41.4 68.7% feature · violin
Endoderm 6 TYB12-like-1 not mapped 1.86 41.3 95.4% feature · violin
Endoderm 7 Wnt4 not mapped 2.95 38.4 65.5% feature · violin
Endoderm 8 DMRT-E not mapped 1.92 38.4 82.7% feature · violin
Endoderm 9 FoxB not mapped 5.29 37.0 50.9% feature · violin
Endoderm 10 Nanos2 not mapped 1.58 33.7 81.4% feature · violin
Endoderm 11 MELC5 not mapped 1.61 30.1 72.2% feature · violin
Endoderm 12 LRWa3-R.204 not mapped 2.31 28.6 51.0% feature · violin
Endoderm 13 NUD20-like-1 not mapped 4.68 27.6 38.3% feature · violin
Endoderm 14 XP_032223871.2 (NV2.639) 1.14 25.9 82.5% feature · violin
Endoderm 15 CH10-like-1 not mapped 0.92 25.9 94.2% feature · violin
Endoderm 16 Nkd1-like not mapped 1.87 25.5 53.1% feature · violin
Endoderm 17 PA2-like-15 not mapped 2.54 25.2 44.4% feature · violin
Endoderm 18 SPY2-like-1 not mapped 1.62 25.0 56.3% feature · violin
Endoderm 19 DMX1B-like-1 not mapped 2.83 25.0 41.0% feature · violin
Endoderm 20 COTL1-like-1 not mapped 1.32 24.5 75.3% feature · violin
Endoderm 21 PRDX5-like-1 not mapped 0.71 24.4 95.4% feature · violin
Endoderm 22 KCC4-like-1 not mapped 1.73 24.4 51.0% feature · violin
Endoderm 23 A1CF-like-1 not mapped 3.80 24.1 34.8% feature · violin
Endoderm 24 NV2.5679 not mapped 1.32 24.0 62.8% feature · violin
Endoderm 25 SBSPO-like-1 not mapped 2.06 23.6 46.7% feature · violin
Endoderm 26 NV2.24183 not mapped 2.80 23.5 38.2% feature · violin
Endoderm 27 Wnt3 not mapped 5.73 23.3 31.2% feature · violin
Endoderm 28 NV2.6264 not mapped 1.95 23.0 62.1% feature · violin
Endoderm 29 NV2.10891 not mapped 1.19 23.0 88.8% feature · violin
Endoderm 30 XP_032223622.2 (NV2.16313) 1.47 22.8 55.3% feature · violin
Endoderm 31 TMX2-like-1 not mapped 1.29 22.6 59.6% feature · violin
Endoderm 32 CYP5F-like-1 not mapped 1.22 22.4 69.4% feature · violin
Endoderm 33 RLR78-like-1 not mapped 2.43 22.4 37.3% feature · violin
Endoderm 34 USH2A-like-2 not mapped 2.48 22.3 38.2% feature · violin
Endoderm 35 Glutathione not mapped 1.47 22.2 52.2% feature · violin
Endoderm 36 ADA1B-like-12 not mapped 3.38 22.2 34.1% feature · violin
Endoderm 37 NV2.16795 not mapped 1.97 22.1 44.2% feature · violin
Endoderm 38 RANG-like-1 not mapped 0.95 21.9 78.2% feature · violin
Endoderm 39 CLIC3-like-1 not mapped 1.83 21.8 42.2% feature · violin
Endoderm 40 XP_001633864.1 (NV2.13863) 0.94 21.6 84.5% feature · violin
Endoderm 41 TAA7H-like-1 not mapped 1.65 21.5 45.1% feature · violin
Endoderm 42 XP_001626867.1 (NV2.24815) 0.91 21.3 83.5% feature · violin
Endoderm 43 SDC-like-4 not mapped 0.70 21.2 93.9% feature · violin
Endoderm 44 MBNL3-like-1 not mapped 0.99 21.2 75.7% feature · violin
Endoderm 45 NV2.4988 not mapped 1.42 21.2 51.6% feature · violin
Endoderm 46 PPR27-like-12 not mapped 1.30 21.1 58.3% feature · violin
Endoderm 47 NIP7-like-1 not mapped 1.00 21.1 71.5% feature · violin
Endoderm 48 LMX1B-like-1 not mapped 3.31 21.1 31.5% feature · violin
Endoderm 49 XP_032229451.1 (NV2.4163) 3.15 21.0 32.2% feature · violin
Endoderm 50 XP_032222897.1 (NV2.12191) 2.73 21.0 34.1% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 44 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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