Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Ectoderm25986 Secretory Progenitor2713 Endoderm2055 Unannotated1542 Mesoderm1489 Cnidocytes1471 Neuronal730 Gland Cells564

Showing the cell type that NV2.25475 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Mesoderm 1 NV2.6264 not mapped 6.90 62.8 99.4% feature · violin
Mesoderm 2 COTL1-like-1 not mapped 3.75 55.3 94.8% feature · violin
Mesoderm 3 SPRC-like-10 not mapped 8.88 54.7 83.9% feature · violin
Mesoderm 4 MCPI-like-1 not mapped 4.21 54.5 92.1% feature · violin
Mesoderm 5 Perl not mapped 8.32 51.3 78.8% feature · violin
Mesoderm 6 VKT2-like-1 not mapped 8.79 51.0 78.2% feature · violin
Mesoderm 7 TICN2-like-1 not mapped 5.04 48.8 78.8% feature · violin
Mesoderm 8 XP_032242874.2 (NV2.13117) 5.12 48.5 78.8% feature · violin
Mesoderm 9 CO4A2-like-1 not mapped 7.73 47.6 73.4% feature · violin
Mesoderm 10 ZF-C3H1 not mapped 4.36 47.5 78.4% feature · violin
Mesoderm 11 Galaxin not mapped 7.39 47.2 73.5% feature · violin
Mesoderm 12 EFHD2-like-1 not mapped 2.42 45.5 92.1% feature · violin
Mesoderm 13 MMPi not mapped 6.83 44.9 69.9% feature · violin
Mesoderm 14 FRIS-like-8 not mapped 7.29 43.8 68.0% feature · violin
Mesoderm 15 XP_032218050.1 (NV2.23418) 6.69 43.5 67.7% feature · violin
Mesoderm 16 HEBP2-like-1 not mapped 8.36 43.0 66.1% feature · violin
Mesoderm 17 XP_032235387.1 (NV2.9093) 9.10 43.0 66.0% feature · violin
Mesoderm 18 Hand2 not mapped 7.12 43.0 66.4% feature · violin
Mesoderm 19 SnailA not mapped 6.21 42.5 66.5% feature · violin
Mesoderm 20 Six4-5 not mapped 5.77 42.4 66.8% feature · violin
Mesoderm 21 XP_001626334.2 (NV2.17520) 7.18 42.4 65.6% feature · violin
Mesoderm 22 ISX-like-6 not mapped 4.29 42.4 70.7% feature · violin
Mesoderm 23 NV2.21203 not mapped 4.41 42.0 69.0% feature · violin
Mesoderm 24 SPRC-like-16 not mapped 8.66 41.8 64.1% feature · violin
Mesoderm 25 ACTC-like-6 not mapped 1.90 40.9 99.1% feature · violin
Mesoderm 26 SPRC-like-1 not mapped 6.70 40.2 62.5% feature · violin
Mesoderm 27 XP_001633937.2 (NV2.16205) 5.96 40.0 65.1% feature · violin
Mesoderm 28 NV2.2010 not mapped 4.87 39.5 64.2% feature · violin
Mesoderm 29 SBSPO-like-1 not mapped 3.23 38.8 73.1% feature · violin
Mesoderm 30 XP_032241950.1 (NV2.25475) 7.64 38.7 59.5% feature · violin
Mesoderm 31 OtxB not mapped 5.63 38.0 59.9% feature · violin
Mesoderm 32 XP_001636442.3 (NV2.101) 3.20 37.8 74.5% feature · violin
Mesoderm 33 MUC6-like-1 not mapped 5.74 36.8 58.0% feature · violin
Mesoderm 34 UD2B2-like-1 not mapped 6.01 36.8 57.5% feature · violin
Mesoderm 35 CALUB-like-1 not mapped 4.31 36.7 60.8% feature · violin
Mesoderm 36 NV2.17963 not mapped 6.75 36.7 57.0% feature · violin
Mesoderm 37 CLIC3-like-1 not mapped 3.24 36.4 65.6% feature · violin
Mesoderm 38 Antp-like4 not mapped 8.66 36.2 55.5% feature · violin
Mesoderm 39 SING-like-2 not mapped 2.73 36.2 72.3% feature · violin
Mesoderm 40 AGRIN-like-2.1 not mapped 5.11 36.0 57.7% feature · violin
Mesoderm 41 NKx2.2D not mapped 7.25 35.8 55.2% feature · violin
Mesoderm 42 TYB12-like-1 not mapped 1.88 35.2 93.4% feature · violin
Mesoderm 43 XP_032223871.2 (NV2.639) 1.75 35.0 85.9% feature · violin
Mesoderm 44 NV2.3734 not mapped 8.33 34.1 52.5% feature · violin
Mesoderm 45 XP_032239014.1 (NV2.3089) 4.42 34.0 56.0% feature · violin
Mesoderm 46 CSRN2-like-1 not mapped 2.70 33.8 66.5% feature · violin
Mesoderm 47 SH3L3-like-1 not mapped 2.23 33.4 74.2% feature · violin
Mesoderm 48 NV2.23876 not mapped 6.26 33.4 52.0% feature · violin
Mesoderm 49 LIPR1-like-1 not mapped 2.86 33.3 63.7% feature · violin
Mesoderm 50 FA9-like-1 not mapped 8.64 33.0 50.6% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 41 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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