Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Cluster 3370 Cluster 0355 Cluster 8330 Cluster 5249 Cluster 10228 Cluster 2222 Cluster 12198 Cluster 11127 Cluster 689 Cluster 1484 Cluster 1383 Cluster 973 Cluster 766 Cluster 434 Cluster 112 Cluster 1512
This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.
Cell type Rank Gene log2 FC Score % detected Plot
Cluster 0 1 NV2.8570 4.43 25.8 99.4% feature · violin
Cluster 0 2 NV2.13196 5.89 25.7 95.5% feature · violin
Cluster 0 3 NV2.10759 7.68 24.6 82.8% feature · violin
Cluster 0 4 NV2.21485 6.84 17.9 60.8% feature · violin
Cluster 0 5 NV2.13030 1.62 17.6 99.7% feature · violin
Cluster 0 6 NV2.23310 2.91 17.3 87.6% feature · violin
Cluster 0 7 NV2.7354 3.27 16.6 71.5% feature · violin
Cluster 0 8 NV2.6537 4.48 15.5 58.0% feature · violin
Cluster 0 9 NV2.1189 3.36 14.3 65.4% feature · violin
Cluster 0 10 NV2.15016 6.97 14.1 47.6% feature · violin
Cluster 0 11 NV2.6430 4.03 13.4 51.0% feature · violin
Cluster 0 12 NV2.6591 5.87 13.1 44.8% feature · violin
Cluster 0 13 NV2.19306 1.78 12.9 95.5% feature · violin
Cluster 0 14 NV2.20083 6.21 12.5 42.5% feature · violin
Cluster 0 15 NV2.1782 6.51 12.3 41.4% feature · violin
Cluster 1 1 NV2.20083 7.60 5.8 100.0% feature · violin
Cluster 1 2 NV2.9834 10.86 5.5 91.7% feature · violin
Cluster 1 3 NV2.9798 10.58 5.5 91.7% feature · violin
Cluster 1 4 NV2.9831 9.04 5.4 91.7% feature · violin
Cluster 1 5 NV2.6537 5.91 5.4 100.0% feature · violin
Cluster 1 6 NV2.10453 6.55 5.3 91.7% feature · violin
Cluster 1 7 NV2.6591 6.03 5.0 91.7% feature · violin
Cluster 1 8 NV2.4414 9.78 5.0 83.3% feature · violin
Cluster 1 9 NV2.4645 9.14 4.9 83.3% feature · violin
Cluster 1 10 NV2.14724 8.19 4.9 83.3% feature · violin
Cluster 1 11 NV2.8570 4.04 4.8 100.0% feature · violin
Cluster 1 12 NV2.20474 5.42 4.6 83.3% feature · violin
Cluster 1 13 NV2.8367 5.03 4.6 83.3% feature · violin
Cluster 1 14 NV2.9829 9.92 4.5 75.0% feature · violin
Cluster 1 15 NV2.13196 4.86 4.4 91.7% feature · violin
Cluster 10 1 NV2.22411 2.06 12.8 96.9% feature · violin
Cluster 10 2 NV2.16205 2.77 12.0 75.9% feature · violin
Cluster 10 3 NV2.16715 3.36 11.1 56.6% feature · violin
Cluster 10 4 NV2.5887 0.87 10.1 99.6% feature · violin
Cluster 10 5 NV2.4262 3.74 10.1 47.4% feature · violin
Cluster 10 6 NV2.19682 2.23 9.9 98.7% feature · violin
Cluster 10 7 NV2.4263 3.22 9.3 46.1% feature · violin
Cluster 10 8 NV2.19701 2.09 8.5 99.1% feature · violin
Cluster 10 9 NV2.25168 2.94 8.5 43.9% feature · violin
Cluster 10 10 NV2.6264 1.76 8.0 97.8% feature · violin
Cluster 10 11 NV2.20278 1.80 7.5 57.9% feature · violin
Cluster 10 12 NV2.7661 1.63 7.4 96.9% feature · violin
Cluster 10 13 NV2.19138 2.35 7.1 41.2% feature · violin
Cluster 10 14 NV2.22408 2.13 7.1 45.2% feature · violin
Cluster 10 15 NV2.22011 2.08 7.0 44.7% feature · violin
Cluster 11 1 NV2.13683 12.94 15.9 83.5% feature · violin
Cluster 11 2 NV2.18817 13.17 15.7 82.7% feature · violin
Cluster 11 3 NV2.10686 11.40 15.3 80.3% feature · violin
Cluster 11 4 NV2.11721 11.30 15.1 79.5% feature · violin
Cluster 11 5 NV2.11816 13.03 14.4 75.6% feature · violin
Cluster 11 6 NV2.11720 11.62 13.5 70.9% feature · violin
Cluster 11 7 NV2.5200 32.88 12.4 65.4% feature · violin
Cluster 11 8 NV2.11818 32.66 11.1 58.3% feature · violin
Cluster 11 9 NV2.11802 12.17 11.1 58.3% feature · violin
Cluster 11 10 NV2.11723 10.06 9.9 52.0% feature · violin
Cluster 11 11 NV2.3425 5.45 9.8 55.9% feature · violin
Cluster 11 12 NV2.13196 3.31 9.6 85.0% feature · violin
Cluster 11 13 NV2.363 11.24 9.1 48.0% feature · violin
Cluster 11 14 NV2.10115 31.55 8.8 46.5% feature · violin
Cluster 11 15 NV2.14012 11.12 8.8 46.5% feature · violin
Cluster 12 1 NV2.24090 0.92 9.2 99.0% feature · violin
Cluster 12 2 NV2.5947 0.96 9.2 96.5% feature · violin
Cluster 12 3 NV2.14597 2.02 8.9 78.3% feature · violin
Cluster 12 4 NV2.19701 2.20 8.9 99.5% feature · violin
Cluster 12 5 NV2.19682 2.13 8.6 99.0% feature · violin
Cluster 12 6 NV2.13111 0.95 8.2 98.0% feature · violin
Cluster 12 7 NV2.18567 0.89 8.2 99.5% feature · violin
Cluster 12 8 NV2.24326 0.98 8.2 97.0% feature · violin
Cluster 12 9 NV2.196 1.17 8.1 97.0% feature · violin
Cluster 12 10 NV2.9713 1.19 8.0 89.4% feature · violin
Cluster 12 11 NV2.22804 1.02 8.0 98.5% feature · violin
Cluster 12 12 NV2.25180 0.82 7.8 96.5% feature · violin
Cluster 12 13 NV2.16121 1.97 7.8 68.7% feature · violin
Cluster 12 14 NV2.20473 0.86 7.7 98.5% feature · violin
Cluster 12 15 NV2.6921 0.97 7.7 93.9% feature · violin
Cluster 13 1 NV2.50 9.19 9.4 61.4% feature · violin
Cluster 13 2 NV2.22547 1.49 9.0 100.0% feature · violin
Cluster 13 3 NV2.4072 4.80 8.6 62.7% feature · violin
Cluster 13 4 NV2.4721 4.18 8.6 66.3% feature · violin
Cluster 13 5 NV2.25610 8.76 8.4 54.2% feature · violin
Cluster 13 6 NV2.25609 9.39 8.2 53.0% feature · violin
Cluster 13 7 NV2.14941 8.49 8.2 53.0% feature · violin
Cluster 13 8 NV2.20124 8.48 8.2 53.0% feature · violin
Cluster 13 9 NV2.1189 3.73 8.1 68.7% feature · violin
Cluster 13 10 NV2.20054 3.46 8.0 66.3% feature · violin
Cluster 13 11 NV2.187 7.38 7.9 51.8% feature · violin
Cluster 13 12 NV2.8570 2.76 7.9 97.6% feature · violin
Cluster 13 13 NV2.7614 2.46 7.8 79.5% feature · violin
Cluster 13 14 NV2.11812 4.07 7.7 57.8% feature · violin
Cluster 13 15 NV2.13562 5.80 7.7 51.8% feature · violin
Cluster 14 1 NV2.3425 8.86 12.2 79.8% feature · violin
Cluster 14 2 NV2.12902 8.93 11.4 73.8% feature · violin
Cluster 14 3 NV2.12904 8.36 11.0 71.4% feature · violin
Cluster 14 4 NV2.13030 1.99 10.9 100.0% feature · violin
Cluster 14 5 NV2.12903 8.13 10.4 67.9% feature · violin
Cluster 14 6 NV2.14921 9.40 10.4 66.7% feature · violin
Cluster 14 7 NV2.25931 2.21 10.1 97.6% feature · violin
Cluster 14 8 NV2.20203 1.11 8.0 100.0% feature · violin
Cluster 14 9 NV2.25910 3.50 7.9 61.9% feature · violin
Cluster 14 10 NV2.1249 1.79 7.4 83.3% feature · violin
Cluster 14 11 NV2.14919 7.84 6.4 41.7% feature · violin
Cluster 14 12 NV2.2713 1.89 6.3 78.6% feature · violin
Cluster 14 13 NV2.21610 7.58 6.1 39.3% feature · violin
Cluster 14 14 NV2.10277 1.83 5.9 67.9% feature · violin
Cluster 14 15 NV2.15977 1.97 5.6 61.9% feature · violin
Cluster 15 1 NV2.22375 13.09 6.0 100.0% feature · violin
Cluster 15 2 NV2.14297 36.03 5.5 91.7% feature · violin
Cluster 15 3 NV2.8119 6.50 5.0 91.7% feature · violin
Cluster 15 4 NV2.3354 13.66 5.0 83.3% feature · violin
Cluster 15 5 NV2.6667 5.85 5.0 91.7% feature · violin
Cluster 15 6 NV2.17219 9.89 4.5 75.0% feature · violin
Cluster 15 7 NV2.4072 5.75 4.1 75.0% feature · violin
Cluster 15 8 NV2.8459 5.22 4.1 75.0% feature · violin
Cluster 15 9 NV2.14515 2.54 4.1 91.7% feature · violin
Cluster 15 10 NV2.20404 2.67 4.1 100.0% feature · violin
Cluster 15 11 NV2.23310 3.32 3.9 91.7% feature · violin
Cluster 15 12 NV2.24371 6.50 3.9 66.7% feature · violin
Cluster 15 13 NV2.15541 3.38 3.8 83.3% feature · violin
Cluster 15 14 NV2.23250 2.57 3.4 83.3% feature · violin
Cluster 15 15 NV2.23896 3.10 3.4 75.0% feature · violin
Cluster 2 1 NV2.8570 2.63 11.8 95.5% feature · violin
Cluster 2 2 NV2.19306 1.98 11.7 95.9% feature · violin
Cluster 2 3 NV2.6667 4.22 11.4 53.6% feature · violin
Cluster 2 4 NV2.20404 1.65 10.6 83.3% feature · violin
Cluster 2 5 NV2.19307 2.37 10.2 72.1% feature · violin
Cluster 2 6 NV2.23310 2.16 10.0 76.1% feature · violin
Cluster 2 7 NV2.4239 3.01 9.9 54.5% feature · violin
Cluster 2 8 NV2.24576 1.64 9.5 77.9% feature · violin
Cluster 2 9 NV2.12087 2.65 9.1 60.8% feature · violin
Cluster 2 10 NV2.23463 3.05 8.9 46.8% feature · violin
Cluster 2 11 NV2.805 3.41 8.3 41.0% feature · violin
Cluster 2 12 NV2.23250 1.63 7.9 65.8% feature · violin
Cluster 2 13 NV2.7915 2.36 7.7 47.7% feature · violin
Cluster 2 14 NV2.11161 2.54 7.4 41.9% feature · violin
Cluster 2 15 NV2.8699 2.32 7.3 45.0% feature · violin
Cluster 3 1 NV2.19682 2.57 16.8 97.8% feature · violin
Cluster 3 2 NV2.19701 2.59 16.3 97.6% feature · violin
Cluster 3 3 NV2.13741 1.34 14.2 98.1% feature · violin
Cluster 3 4 NV2.22804 1.25 14.1 98.4% feature · violin
Cluster 3 5 NV2.6548 1.22 14.0 97.8% feature · violin
Cluster 3 6 NV2.17125 1.33 13.9 97.3% feature · violin
Cluster 3 7 NV2.18567 1.05 13.5 99.7% feature · violin
Cluster 3 8 NV2.5735 1.16 13.2 98.9% feature · violin
Cluster 3 9 NV2.24090 1.01 13.1 99.2% feature · violin
Cluster 3 10 NV2.11038 0.95 13.1 99.7% feature · violin
Cluster 3 11 NV2.16710 0.95 13.1 99.5% feature · violin
Cluster 3 12 NV2.7661 1.95 13.0 96.8% feature · violin
Cluster 3 13 NV2.11574 1.09 12.9 97.3% feature · violin
Cluster 3 14 NV2.21707 1.19 12.9 98.1% feature · violin
Cluster 3 15 NV2.9614 1.17 12.7 97.6% feature · violin
Cluster 4 1 NV2.19701 2.31 5.0 97.1% feature · violin
Cluster 4 2 NV2.22556 4.01 4.3 50.0% feature · violin
Cluster 4 3 NV2.19682 1.96 4.3 94.1% feature · violin
Cluster 4 4 NV2.7661 1.99 4.3 100.0% feature · violin
Cluster 4 5 NV2.22555 4.29 4.2 47.1% feature · violin
Cluster 4 6 NV2.20203 1.01 4.2 100.0% feature · violin
Cluster 4 7 NV2.6264 1.75 3.7 97.1% feature · violin
Cluster 4 8 NV2.18467 1.11 3.7 100.0% feature · violin
Cluster 4 9 NV2.22728 0.87 3.6 97.1% feature · violin
Cluster 4 10 NV2.13311 0.73 3.6 97.1% feature · violin
Cluster 4 11 NV2.24090 0.85 3.5 100.0% feature · violin
Cluster 4 12 NV2.14167 1.20 3.5 100.0% feature · violin
Cluster 4 13 NV2.13741 1.08 3.5 100.0% feature · violin
Cluster 4 14 NV2.16453 0.91 3.4 97.1% feature · violin
Cluster 4 15 NV2.21707 1.08 3.4 100.0% feature · violin
Cluster 5 1 NV2.17964 2.73 11.8 73.5% feature · violin
Cluster 5 2 NV2.101 2.22 10.6 73.9% feature · violin
Cluster 5 3 NV2.19682 2.29 9.8 100.0% feature · violin
Cluster 5 4 NV2.19701 2.24 9.7 99.6% feature · violin
Cluster 5 5 NV2.16006 2.41 9.6 59.8% feature · violin
Cluster 5 6 NV2.6264 1.98 9.5 100.0% feature · violin
Cluster 5 7 NV2.16205 2.17 9.5 72.7% feature · violin
Cluster 5 8 NV2.23230 1.96 9.4 76.7% feature · violin
Cluster 5 9 NV2.22411 1.62 9.3 94.4% feature · violin
Cluster 5 10 NV2.2147 2.37 8.9 54.2% feature · violin
Cluster 5 11 NV2.7661 1.81 8.9 98.0% feature · violin
Cluster 5 12 NV2.14367 1.90 8.7 72.3% feature · violin
Cluster 5 13 NV2.3454 1.10 8.6 96.0% feature · violin
Cluster 5 14 NV2.24090 0.88 8.5 99.6% feature · violin
Cluster 5 15 NV2.14515 1.57 8.5 87.6% feature · violin
Cluster 6 1 NV2.2749 7.62 10.9 69.7% feature · violin
Cluster 6 2 NV2.2664 7.36 10.4 67.4% feature · violin
Cluster 6 3 NV2.6264 1.85 5.7 98.9% feature · violin
Cluster 6 4 NV2.24033 1.35 4.6 62.9% feature · violin
Cluster 6 5 NV2.8299 3.99 4.2 29.2% feature · violin
Cluster 6 6 NV2.12252 1.80 4.0 42.7% feature · violin
Cluster 6 7 NV2.9558 5.03 3.6 23.6% feature · violin
Cluster 6 8 NV2.20203 0.59 3.5 100.0% feature · violin
Cluster 6 9 NV2.2816 0.52 3.5 89.9% feature · violin
Cluster 6 10 NV2.14597 1.25 3.5 69.7% feature · violin
Cluster 6 11 NV2.25180 0.46 3.4 93.3% feature · violin
Cluster 6 12 NV2.4738 0.49 3.3 92.1% feature · violin
Cluster 6 13 NV2.21823 0.69 3.3 77.5% feature · violin
Cluster 6 14 NV2.132 0.59 3.2 93.3% feature · violin
Cluster 6 15 NV2.21707 0.33 2.9 88.8% feature · violin
Cluster 7 1 NV2.8119 9.13 13.7 100.0% feature · violin
Cluster 7 2 NV2.17681 9.40 13.4 97.0% feature · violin
Cluster 7 3 NV2.5271 10.29 13.2 95.5% feature · violin
Cluster 7 4 NV2.17732 6.44 12.8 95.5% feature · violin
Cluster 7 5 NV2.19894 9.20 12.1 87.9% feature · violin
Cluster 7 6 NV2.8024 6.64 11.9 89.4% feature · violin
Cluster 7 7 NV2.8895 9.42 11.7 84.8% feature · violin
Cluster 7 8 NV2.18989 4.71 11.7 92.4% feature · violin
Cluster 7 9 NV2.23535 5.36 11.1 84.8% feature · violin
Cluster 7 10 NV2.8828 8.55 10.0 72.7% feature · violin
Cluster 7 11 NV2.19114 6.96 9.5 69.7% feature · violin
Cluster 7 12 NV2.17940 8.54 9.0 65.2% feature · violin
Cluster 7 13 NV2.19896 9.86 8.8 63.6% feature · violin
Cluster 7 14 NV2.11447 4.52 8.3 66.7% feature · violin
Cluster 7 15 NV2.21644 4.44 8.2 68.2% feature · violin
Cluster 8 1 NV2.14367 2.80 15.1 78.2% feature · violin
Cluster 8 2 NV2.3632 2.65 14.2 75.5% feature · violin
Cluster 8 3 NV2.3734 2.57 12.9 71.5% feature · violin
Cluster 8 4 NV2.22684 2.99 12.7 58.8% feature · violin
Cluster 8 5 NV2.8804 2.04 11.7 77.3% feature · violin
Cluster 8 6 NV2.23230 2.09 11.5 73.0% feature · violin
Cluster 8 7 NV2.23812 2.45 11.0 57.0% feature · violin
Cluster 8 8 NV2.19306 1.60 10.7 95.8% feature · violin
Cluster 8 9 NV2.23229 2.06 10.5 64.5% feature · violin
Cluster 8 10 NV2.15882 2.00 10.4 66.4% feature · violin
Cluster 8 11 NV2.10172 1.95 10.3 67.3% feature · violin
Cluster 8 12 NV2.7762 2.41 9.3 47.0% feature · violin
Cluster 8 13 NV2.12108 1.68 9.2 67.0% feature · violin
Cluster 8 14 NV2.4715 2.12 9.0 49.7% feature · violin
Cluster 8 15 NV2.17964 1.92 8.8 57.9% feature · violin
Cluster 9 1 NV2.10172 1.50 3.9 68.5% feature · violin
Cluster 9 2 NV2.19895 1.84 3.8 45.2% feature · violin
Cluster 9 3 NV2.5887 0.23 3.8 93.2% feature · violin
Cluster 9 4 NV2.16147 6.05 3.5 24.7% feature · violin
Cluster 9 5 NV2.2701 1.51 3.4 47.9% feature · violin
Cluster 9 6 NV2.10894 5.12 3.3 23.3% feature · violin
Cluster 9 7 NV2.23669 1.28 3.3 56.2% feature · violin
Cluster 9 8 NV2.11595 1.25 3.2 63.0% feature · violin
Cluster 9 9 NV2.101 1.23 3.2 60.3% feature · violin
Cluster 9 10 NV2.10277 1.14 3.2 64.4% feature · violin
Cluster 9 11 NV2.13257 1.33 3.1 45.2% feature · violin
Cluster 9 12 NV2.18830 2.37 3.1 28.8% feature · violin
Cluster 9 13 NV2.21109 1.46 3.0 41.1% feature · violin
Cluster 9 14 NV2.12435 1.22 3.0 49.3% feature · violin
Cluster 9 15 NV2.6264 0.80 3.0 82.2% feature · violin
TOP