Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.10687 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 11 1 XP_001633083.2 (NV2.13683) 12.94 15.9 83.5% feature · violin
Cluster 11 2 XP_048584605.1 (NV2.18817) 13.17 15.7 82.7% feature · violin
Cluster 11 3 XP_032218917.1 (NV2.10686) 11.40 15.3 80.3% feature · violin
Cluster 11 4 NV2.11721 not mapped 11.30 15.1 79.5% feature · violin
Cluster 11 5 NV2.11816 not mapped 13.03 14.4 75.6% feature · violin
Cluster 11 6 XP_001641112.2 (NV2.11720) 11.62 13.5 70.9% feature · violin
Cluster 11 7 XP_032220171.1 (NV2.5200) 32.88 12.4 65.4% feature · violin
Cluster 11 8 XP_048576925.1 (NV2.11818) 32.66 11.1 58.3% feature · violin
Cluster 11 9 NV2.11802 not mapped 12.17 11.1 58.3% feature · violin
Cluster 11 10 XP_032222173.2 (NV2.11723) 10.06 9.9 52.0% feature · violin
Cluster 11 11 NV2.3425 not mapped 5.45 9.8 55.9% feature · violin
Cluster 11 12 NV2.13196 not mapped 3.31 9.6 85.0% feature · violin
Cluster 11 13 NV2.363 not mapped 11.24 9.1 48.0% feature · violin
Cluster 11 14 NV2.10115 not mapped 31.55 8.8 46.5% feature · violin
Cluster 11 15 XP_048581718.1 (NV2.14012) 11.12 8.8 46.5% feature · violin
Cluster 11 16 NV2.1189 not mapped 3.14 8.7 65.4% feature · violin
Cluster 11 17 NV2.8570 not mapped 2.36 8.5 90.6% feature · violin
Cluster 11 18 XP_048579868.1 (NV2.11820) 31.58 8.4 44.1% feature · violin
Cluster 11 19 XP_032232817.1 (NV2.4239) 2.84 8.2 62.2% feature · violin
Cluster 11 20 XP_001625396.1 (NV2.24797) 1.97 8.1 82.7% feature · violin
Cluster 11 21 XP_032222353.2 (NV2.11821) 31.32 7.9 41.7% feature · violin
Cluster 11 22 NV2.4072 not mapped 3.52 7.7 49.6% feature · violin
Cluster 11 23 XP_001639719.1 (NV2.23615) 3.14 7.6 51.2% feature · violin
Cluster 11 24 NV2.12903 not mapped 4.18 7.0 40.2% feature · violin
Cluster 11 25 XP_032239984.1 (NV2.7354) 2.10 6.9 66.1% feature · violin
Cluster 11 26 XP_001631794.2 (NV2.10038) 7.18 6.8 36.2% feature · violin
Cluster 11 27 XP_001641534.3 (NV2.12087) 2.16 6.6 67.7% feature · violin
Cluster 11 28 XP_032239608.1 (NV2.23250) 1.72 6.6 78.7% feature · violin
Cluster 11 29 XP_001641982.2 (NV2.16293) 9.15 6.6 34.6% feature · violin
Cluster 11 30 XP_001630069.1 (NV2.8119) 2.36 6.6 52.8% feature · violin
Cluster 11 31 XP_001628750.1 (NV2.4212) 2.91 6.4 43.3% feature · violin
Cluster 11 32 NV2.1851 not mapped 5.17 6.4 35.4% feature · violin
Cluster 11 33 XP_032218912.2 (NV2.10687) 6.95 6.4 33.9% feature · violin
Cluster 11 34 XP_048580560.1 (NV2.15283) 6.50 6.3 33.9% feature · violin
Cluster 11 35 XP_032233826.2 (NV2.12690) 9.55 6.3 33.1% feature · violin
Cluster 11 36 XP_032238867.2 (NV2.9534) 8.73 6.1 32.3% feature · violin
Cluster 11 37 NV2.19307 not mapped 1.72 5.9 73.2% feature · violin
Cluster 11 38 XP_001630142.2 (NV2.7915) 1.98 5.8 53.5% feature · violin
Cluster 11 39 NV2.1062 not mapped 1.48 5.7 71.7% feature · violin
Cluster 11 40 NV2.6028 not mapped 4.52 5.7 32.3% feature · violin
Cluster 11 41 XP_001636593.2 (NV2.16121) 1.79 5.7 65.4% feature · violin
Cluster 11 42 XP_032226184.2 (NV2.10392) 10.52 5.7 29.9% feature · violin
Cluster 11 43 XP_001626714.2 (NV2.23668) 8.69 5.7 29.9% feature · violin
Cluster 11 44 XP_048584633.1 (NV2.18585) 8.31 5.7 29.9% feature · violin
Cluster 11 45 XP_001629343.2 (NV2.12640) 1.07 5.6 89.0% feature · violin
Cluster 11 46 XP_001636251.2 (NV2.15563) 1.97 5.6 48.8% feature · violin
Cluster 11 47 XP_048580143.1 (NV2.12689) 30.34 5.5 29.1% feature · violin
Cluster 11 48 XP_032237757.1 (NV2.10312) 4.49 5.5 30.7% feature · violin
Cluster 11 49 XP_048579463.1 (NV2.12902) 3.62 5.5 32.3% feature · violin
Cluster 11 50 XP_001641455.1 (NV2.12154) 1.21 5.3 66.1% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 15 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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