Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.19138 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 10 1 NV2.22411 not mapped 2.06 12.8 96.9% feature · violin
Cluster 10 2 XP_001633937.2 (NV2.16205) 2.77 12.0 75.9% feature · violin
Cluster 10 3 XP_048582195.1 (NV2.16715) 3.36 11.1 56.6% feature · violin
Cluster 10 4 NV2.5887 not mapped 0.87 10.1 99.6% feature · violin
Cluster 10 5 XP_048576816.1 (NV2.4262) 3.74 10.1 47.4% feature · violin
Cluster 10 6 NV2.19682 not mapped 2.23 9.9 98.7% feature · violin
Cluster 10 7 XP_032231895.2 (NV2.4263) 3.22 9.3 46.1% feature · violin
Cluster 10 8 XP_001624357.2 (NV2.19701) 2.09 8.5 99.1% feature · violin
Cluster 10 9 XP_032220115.1 (NV2.25168) 2.94 8.5 43.9% feature · violin
Cluster 10 10 NV2.6264 not mapped 1.76 8.0 97.8% feature · violin
Cluster 10 11 XP_032238394.2 (NV2.20278) 1.80 7.5 57.9% feature · violin
Cluster 10 12 XP_001630583.1 (NV2.7661) 1.63 7.4 96.9% feature · violin
Cluster 10 13 XP_032226172.1 (NV2.19138) 2.35 7.1 41.2% feature · violin
Cluster 10 14 XP_001637285.1 (NV2.22408) 2.13 7.1 45.2% feature · violin
Cluster 10 15 XP_001624324.2 (NV2.22011) 2.08 7.0 44.7% feature · violin
Cluster 10 16 NV2.8699 not mapped 1.94 7.0 48.2% feature · violin
Cluster 10 17 XP_001633847.1 (NV2.3097) 0.86 6.9 99.6% feature · violin
Cluster 10 18 XP_001624802.2 (NV2.22728) 0.75 6.7 96.9% feature · violin
Cluster 10 19 XP_001631784.1 (NV2.10086) 1.02 6.7 94.3% feature · violin
Cluster 10 20 XP_001630169.2 (NV2.7838) 1.53 6.7 57.0% feature · violin
Cluster 10 21 XP_001622874.2 (NV2.19607) 1.54 6.5 59.6% feature · violin
Cluster 10 22 XP_001624703.2 (NV2.6548) 0.88 6.5 98.2% feature · violin
Cluster 10 23 XP_001633026.1 (NV2.21707) 0.73 6.4 94.7% feature · violin
Cluster 10 24 XP_032234748.2 (NV2.10172) 1.43 6.3 61.4% feature · violin
Cluster 10 25 XP_001640445.1 (NV2.7080) 0.69 6.3 97.4% feature · violin
Cluster 10 26 XP_001639319.1 (NV2.5129) 1.20 6.1 75.9% feature · violin
Cluster 10 27 NV2.14597 not mapped 1.29 5.8 68.4% feature · violin
Cluster 10 28 XP_001640531.2 (NV2.20543) 1.08 5.7 84.2% feature · violin
Cluster 10 29 XP_001629540.2 (NV2.15194) 2.72 5.7 28.5% feature · violin
Cluster 10 30 XP_048575905.1 (NV2.7901) 2.53 5.6 29.8% feature · violin
Cluster 10 31 XP_001625396.1 (NV2.24797) 1.28 5.6 79.8% feature · violin
Cluster 10 32 XP_001633907.2 (NV2.13887) 2.13 5.6 32.9% feature · violin
Cluster 10 33 NV2.14515 not mapped 1.13 5.6 81.1% feature · violin
Cluster 10 34 XP_032239644.2 (NV2.23229) 1.30 5.6 58.3% feature · violin
Cluster 10 35 XP_001637932.2 (NV2.11252) 1.06 5.5 87.7% feature · violin
Cluster 10 36 XP_032241038.2 (NV2.21870) 1.58 5.5 42.5% feature · violin
Cluster 10 37 XP_032238357.2 (NV2.20203) 0.60 5.5 99.6% feature · violin
Cluster 10 38 XP_048584521.1 (NV2.18567) 0.63 5.4 98.2% feature · violin
Cluster 10 39 XP_001636882.2 (NV2.11574) 0.68 5.4 96.1% feature · violin
Cluster 10 40 NV2.7377 not mapped 1.82 5.4 35.1% feature · violin
Cluster 10 41 XP_001639308.1 (NV2.25210) 0.92 5.3 89.0% feature · violin
Cluster 10 42 XP_032217735.1 (NV2.1174) 1.28 5.3 55.3% feature · violin
Cluster 10 43 XP_001636442.3 (NV2.101) 1.24 5.3 62.3% feature · violin
Cluster 10 44 XP_048580083.1 (NV2.11157) 0.90 5.3 84.6% feature · violin
Cluster 10 45 XP_001631646.1 (NV2.13986) 1.15 5.3 71.1% feature · violin
Cluster 10 46 NV2.17435 not mapped 2.04 5.3 31.1% feature · violin
Cluster 10 47 XP_032221033.1 (NV2.6921) 0.71 5.2 92.5% feature · violin
Cluster 10 48 XP_001641794.1 (NV2.9713) 0.94 5.2 90.4% feature · violin
Cluster 10 49 XP_048588130.1 (NV2.22804) 0.73 5.2 96.9% feature · violin
Cluster 10 50 XP_001633500.3 (NV2.14167) 0.74 5.1 94.7% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 9 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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