Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.2165 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 13 1 NV2.50 not mapped 9.19 9.4 61.4% feature · violin
Cluster 13 2 NV2.22547 not mapped 1.49 9.0 100.0% feature · violin
Cluster 13 3 NV2.4072 not mapped 4.80 8.6 62.7% feature · violin
Cluster 13 4 NV2.4721 not mapped 4.18 8.6 66.3% feature · violin
Cluster 13 5 NV2.25610 not mapped 8.76 8.4 54.2% feature · violin
Cluster 13 6 NV2.25609 not mapped 9.39 8.2 53.0% feature · violin
Cluster 13 7 NV2.14941 not mapped 8.49 8.2 53.0% feature · violin
Cluster 13 8 NV2.20124 not mapped 8.48 8.2 53.0% feature · violin
Cluster 13 9 NV2.1189 not mapped 3.73 8.1 68.7% feature · violin
Cluster 13 10 XP_048586062.1 (NV2.20054) 3.46 8.0 66.3% feature · violin
Cluster 13 11 XP_032234687.1 (NV2.187) 7.38 7.9 51.8% feature · violin
Cluster 13 12 NV2.8570 not mapped 2.76 7.9 97.6% feature · violin
Cluster 13 13 XP_032228005.1 (NV2.7614) 2.46 7.8 79.5% feature · violin
Cluster 13 14 XP_001641078.1 (NV2.11812) 4.07 7.7 57.8% feature · violin
Cluster 13 15 NV2.13562 not mapped 5.80 7.7 51.8% feature · violin
Cluster 13 16 XP_001636829.2 (NV2.11584) 6.69 7.6 50.6% feature · violin
Cluster 13 17 XP_001622663.1 (NV2.24641) 8.94 7.4 48.2% feature · violin
Cluster 13 18 XP_001640793.1 (NV2.18928) 7.87 7.4 48.2% feature · violin
Cluster 13 19 NV2.24159 not mapped 8.07 7.0 45.8% feature · violin
Cluster 13 20 XP_001633323.2 (NV2.20205) 1.96 6.9 81.9% feature · violin
Cluster 13 21 NV2.18300 not mapped 9.18 6.9 44.6% feature · violin
Cluster 13 22 NV2.2713 not mapped 2.31 6.8 77.1% feature · violin
Cluster 13 23 NV2.24723 not mapped 4.28 6.7 48.2% feature · violin
Cluster 13 24 NV2.18830 not mapped 4.09 6.6 48.2% feature · violin
Cluster 13 25 XP_048586119.1 (NV2.19749) 8.27 6.1 39.8% feature · violin
Cluster 13 26 XP_001636593.2 (NV2.16121) 2.58 6.1 63.9% feature · violin
Cluster 13 27 NV2.19307 not mapped 2.20 6.1 71.1% feature · violin
Cluster 13 28 NV2.13196 not mapped 2.59 5.9 73.5% feature · violin
Cluster 13 29 NV2.8891 not mapped 3.34 5.8 47.0% feature · violin
Cluster 13 30 XP_048588459.1 (NV2.1969) 3.39 5.8 47.0% feature · violin
Cluster 13 31 XP_001637641.2 (NV2.23310) 1.85 5.6 74.7% feature · violin
Cluster 13 32 XP_001641534.3 (NV2.12087) 2.51 5.6 60.2% feature · violin
Cluster 13 33 NV2.20515 not mapped 3.55 5.5 42.2% feature · violin
Cluster 13 34 XP_001641667.2 (NV2.3272) 6.13 5.3 34.9% feature · violin
Cluster 13 35 XP_032240294.2 (NV2.10973) 3.03 5.3 43.4% feature · violin
Cluster 13 36 XP_001640903.2 (NV2.1654) 1.98 5.2 60.2% feature · violin
Cluster 13 37 XP_048587873.1 (NV2.2165) 2.55 5.2 48.2% feature · violin
Cluster 13 38 XP_001629343.2 (NV2.12640) 1.16 5.2 83.1% feature · violin
Cluster 13 39 NV2.19306 not mapped 1.46 5.1 96.4% feature · violin
Cluster 13 40 NV2.17986 not mapped 1.90 5.1 59.0% feature · violin
Cluster 13 41 XP_032219264.1 (NV2.14538) 2.77 5.0 45.8% feature · violin
Cluster 13 42 NV2.4071 not mapped 2.81 5.0 42.2% feature · violin
Cluster 13 43 XP_001625293.3 (NV2.5614) 6.71 5.0 32.5% feature · violin
Cluster 13 44 XP_032219880.1 (NV2.2930) 3.59 5.0 37.3% feature · violin
Cluster 13 45 XP_048585260.1 (NV2.17644) 5.69 4.9 32.5% feature · violin
Cluster 13 46 XP_032223693.1 (NV2.805) 2.80 4.9 42.2% feature · violin
Cluster 13 47 XP_048581979.1 (NV2.17269) 10.85 4.9 31.3% feature · violin
Cluster 13 48 NV2.4122 not mapped 3.93 4.8 34.9% feature · violin
Cluster 13 49 XP_032228508.2 (NV2.12829) 2.10 4.7 50.6% feature · violin
Cluster 13 50 XP_001637976.1 (NV2.4680) 2.79 4.7 39.8% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 24 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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