Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.24326 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 12 1 XP_001637830.2 (NV2.24090) 0.92 9.2 99.0% feature · violin
Cluster 12 2 XP_001622696.2 (NV2.5947) 0.96 9.2 96.5% feature · violin
Cluster 12 3 NV2.14597 not mapped 2.02 8.9 78.3% feature · violin
Cluster 12 4 XP_001624357.2 (NV2.19701) 2.20 8.9 99.5% feature · violin
Cluster 12 5 NV2.19682 not mapped 2.13 8.6 99.0% feature · violin
Cluster 12 6 XP_032242836.1 (NV2.13111) 0.95 8.2 98.0% feature · violin
Cluster 12 7 XP_048584521.1 (NV2.18567) 0.89 8.2 99.5% feature · violin
Cluster 12 8 NV2.24326 not mapped 0.98 8.2 97.0% feature · violin
Cluster 12 9 XP_001630296.1 (NV2.196) 1.17 8.1 97.0% feature · violin
Cluster 12 10 XP_001641794.1 (NV2.9713) 1.19 8.0 89.4% feature · violin
Cluster 12 11 XP_048588130.1 (NV2.22804) 1.02 8.0 98.5% feature · violin
Cluster 12 12 XP_032220058.1 (NV2.25180) 0.82 7.8 96.5% feature · violin
Cluster 12 13 XP_001636593.2 (NV2.16121) 1.97 7.8 68.7% feature · violin
Cluster 12 14 XP_001640566.1 (NV2.20473) 0.86 7.7 98.5% feature · violin
Cluster 12 15 XP_032221033.1 (NV2.6921) 0.97 7.7 93.9% feature · violin
Cluster 12 16 XP_001638335.1 (NV2.6199) 1.00 7.7 97.0% feature · violin
Cluster 12 17 XP_001633026.1 (NV2.21707) 0.92 7.7 96.5% feature · violin
Cluster 12 18 XP_001624649.1 (NV2.9355) 1.02 7.6 94.9% feature · violin
Cluster 12 19 XP_032227169.2 (NV2.13741) 1.11 7.5 99.0% feature · violin
Cluster 12 20 XP_001641441.1 (NV2.12123) 0.77 7.5 97.5% feature · violin
Cluster 12 21 XP_001629584.1 (NV2.15226) 0.81 7.4 96.5% feature · violin
Cluster 12 22 XP_001640327.1 (NV2.7077) 0.90 7.4 94.9% feature · violin
Cluster 12 23 XP_001639659.2 (NV2.18467) 0.93 7.4 97.0% feature · violin
Cluster 12 24 XP_048582403.1 (NV2.17125) 0.94 7.4 94.4% feature · violin
Cluster 12 25 XP_001624703.2 (NV2.6548) 0.97 7.4 98.0% feature · violin
Cluster 12 26 XP_001633847.1 (NV2.3097) 0.85 7.3 98.5% feature · violin
Cluster 12 27 NV2.23452 not mapped 0.98 7.3 94.4% feature · violin
Cluster 12 28 XP_001627740.1 (NV2.22180) 0.91 7.3 98.0% feature · violin
Cluster 12 29 NV2.7223 not mapped 0.81 7.2 98.0% feature · violin
Cluster 12 30 XP_001639626.1 (NV2.16453) 0.83 7.2 95.5% feature · violin
Cluster 12 31 XP_001633500.3 (NV2.14167) 0.93 7.2 96.0% feature · violin
Cluster 12 32 XP_001624802.2 (NV2.22728) 0.84 7.1 97.5% feature · violin
Cluster 12 33 XP_001628718.1 (NV2.6333) 1.09 7.1 93.9% feature · violin
Cluster 12 34 XP_032240282.2 (NV2.10986) 0.91 7.0 96.0% feature · violin
Cluster 12 35 NV2.18364 not mapped 0.90 7.0 98.0% feature · violin
Cluster 12 36 XP_032239366.1 (NV2.13311) 0.76 7.0 98.5% feature · violin
Cluster 12 37 NV2.23370 not mapped 0.81 7.0 94.9% feature · violin
Cluster 12 38 XP_001622225.1 (NV2.6672) 0.74 7.0 94.9% feature · violin
Cluster 12 39 XP_001636882.2 (NV2.11574) 0.73 7.0 94.4% feature · violin
Cluster 12 40 XP_001641025.1 (NV2.11636) 0.96 6.9 91.9% feature · violin
Cluster 12 41 XP_001641859.1 (NV2.3454) 1.01 6.7 96.0% feature · violin
Cluster 12 42 XP_001630583.1 (NV2.7661) 1.55 6.7 96.0% feature · violin
Cluster 12 43 XP_048589003.1 (NV2.21794) 1.08 6.7 84.3% feature · violin
Cluster 12 44 NV2.15684 not mapped 0.92 6.4 98.5% feature · violin
Cluster 12 45 XP_001625647.2 (NV2.8478) 0.75 6.4 93.9% feature · violin
Cluster 12 46 NV2.3711 not mapped 1.16 6.4 83.8% feature · violin
Cluster 12 47 XP_001632549.1 (NV2.3883) 0.93 6.3 97.5% feature · violin
Cluster 12 48 XP_001631045.1 (NV2.2816) 0.85 6.3 94.4% feature · violin
Cluster 12 49 NV2.8394 not mapped 1.52 6.3 60.6% feature · violin
Cluster 12 50 XP_001629850.3 (NV2.16710) 0.68 6.2 99.5% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 10 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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