Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.2713 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 14 1 NV2.3425 not mapped 8.86 12.2 79.8% feature · violin
Cluster 14 2 XP_048579463.1 (NV2.12902) 8.93 11.4 73.8% feature · violin
Cluster 14 3 NV2.12904 not mapped 8.36 11.0 71.4% feature · violin
Cluster 14 4 NV2.13030 not mapped 1.99 10.9 100.0% feature · violin
Cluster 14 5 NV2.12903 not mapped 8.13 10.4 67.9% feature · violin
Cluster 14 6 XP_048580776.1 (NV2.14921) 9.40 10.4 66.7% feature · violin
Cluster 14 7 NV2.25931 not mapped 2.21 10.1 97.6% feature · violin
Cluster 14 8 XP_032238357.2 (NV2.20203) 1.11 8.0 100.0% feature · violin
Cluster 14 9 NV2.25910 not mapped 3.50 7.9 61.9% feature · violin
Cluster 14 10 NV2.1249 not mapped 1.79 7.4 83.3% feature · violin
Cluster 14 11 NV2.14919 not mapped 7.84 6.4 41.7% feature · violin
Cluster 14 12 NV2.2713 not mapped 1.89 6.3 78.6% feature · violin
Cluster 14 13 NV2.21610 not mapped 7.58 6.1 39.3% feature · violin
Cluster 14 14 NV2.10277 not mapped 1.83 5.9 67.9% feature · violin
Cluster 14 15 NV2.15977 not mapped 1.97 5.6 61.9% feature · violin
Cluster 14 16 NV2.13196 not mapped 2.43 5.6 69.0% feature · violin
Cluster 14 17 NV2.19293 not mapped 2.22 5.5 57.1% feature · violin
Cluster 14 18 XP_032242610.1 (NV2.11564) 6.44 5.3 34.5% feature · violin
Cluster 14 19 NV2.1062 not mapped 1.61 5.2 67.9% feature · violin
Cluster 14 20 XP_032236645.1 (NV2.6785) 7.07 5.1 33.3% feature · violin
Cluster 14 21 NV2.19306 not mapped 1.44 5.0 97.6% feature · violin
Cluster 14 22 NV2.18292 not mapped 9.47 5.0 32.1% feature · violin
Cluster 14 23 NV2.15541 not mapped 1.62 4.9 67.9% feature · violin
Cluster 14 24 XP_032238014.2 (NV2.21677) 7.12 4.8 31.0% feature · violin
Cluster 14 25 XP_001632985.2 (NV2.21678) 7.03 4.8 31.0% feature · violin
Cluster 14 26 XP_001632041.1 (NV2.22513) 1.83 4.7 53.6% feature · violin
Cluster 14 27 XP_032223693.1 (NV2.805) 2.60 4.6 40.5% feature · violin
Cluster 14 28 NV2.17986 not mapped 1.60 4.6 59.5% feature · violin
Cluster 14 29 NV2.4721 not mapped 2.08 4.3 44.0% feature · violin
Cluster 14 30 NV2.19057 not mapped 6.06 4.2 27.4% feature · violin
Cluster 14 31 XP_032237946.2 (NV2.13531) 1.04 4.1 77.4% feature · violin
Cluster 14 32 XP_001630069.1 (NV2.8119) 2.02 4.1 42.9% feature · violin
Cluster 14 33 NV2.20396 not mapped 2.24 4.0 38.1% feature · violin
Cluster 14 34 XP_001637641.2 (NV2.23310) 1.32 4.0 72.6% feature · violin
Cluster 14 35 XP_032217735.1 (NV2.1174) 1.57 4.0 53.6% feature · violin
Cluster 14 36 XP_001639141.2 (NV2.2894) 2.50 3.9 33.3% feature · violin
Cluster 14 37 NV2.17838 not mapped 3.41 3.9 28.6% feature · violin
Cluster 14 38 NV2.13562 not mapped 3.70 3.8 27.4% feature · violin
Cluster 14 39 XP_032234772.1 (NV2.10185) 3.01 3.8 29.8% feature · violin
Cluster 14 40 XP_001631593.2 (NV2.23891) 1.58 3.7 45.2% feature · violin
Cluster 14 41 NV2.5899 not mapped 0.61 3.5 76.2% feature · violin
Cluster 14 42 XP_048586242.1 (NV2.19595) 2.70 3.5 28.6% feature · violin
Cluster 14 43 NV2.1063 not mapped 1.55 3.4 42.9% feature · violin
Cluster 14 44 NV2.24576 not mapped 0.89 3.4 71.4% feature · violin
Cluster 14 45 XP_001627013.1 (NV2.4389) 1.42 3.4 45.2% feature · violin
Cluster 14 46 XP_001641078.1 (NV2.11812) 2.12 3.4 32.1% feature · violin
Cluster 14 47 XP_032229515.2 (NV2.11161) 1.75 3.3 35.7% feature · violin
Cluster 14 48 XP_048585616.1 (NV2.17740) 3.70 3.2 22.6% feature · violin
Cluster 14 49 NV2.11730 not mapped 10.36 3.2 20.2% feature · violin
Cluster 14 50 XP_001636562.2 (NV2.3804) 1.39 3.1 41.7% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 28 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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