Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.8273 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 15 1 XP_032243257.2 (NV2.22375) 13.09 6.0 100.0% feature · violin
Cluster 15 2 XP_032230428.1 (NV2.14297) 36.03 5.5 91.7% feature · violin
Cluster 15 3 XP_001630069.1 (NV2.8119) 6.50 5.0 91.7% feature · violin
Cluster 15 4 NV2.3354 not mapped 13.66 5.0 83.3% feature · violin
Cluster 15 5 NV2.6667 not mapped 5.85 5.0 91.7% feature · violin
Cluster 15 6 XP_048582374.1 (NV2.17219) 9.89 4.5 75.0% feature · violin
Cluster 15 7 NV2.4072 not mapped 5.75 4.1 75.0% feature · violin
Cluster 15 8 XP_001625659.3 (NV2.8459) 5.22 4.1 75.0% feature · violin
Cluster 15 9 NV2.14515 not mapped 2.54 4.1 91.7% feature · violin
Cluster 15 10 XP_001640689.1 (NV2.20404) 2.67 4.1 100.0% feature · violin
Cluster 15 11 XP_001637641.2 (NV2.23310) 3.32 3.9 91.7% feature · violin
Cluster 15 12 XP_001634364.3 (NV2.24371) 6.50 3.9 66.7% feature · violin
Cluster 15 13 NV2.15541 not mapped 3.38 3.8 83.3% feature · violin
Cluster 15 14 XP_032239608.1 (NV2.23250) 2.57 3.4 83.3% feature · violin
Cluster 15 15 NV2.23896 not mapped 3.10 3.4 75.0% feature · violin
Cluster 15 16 XP_032240112.2 (NV2.17676) 4.02 3.4 66.7% feature · violin
Cluster 15 17 XP_001638173.2 (NV2.22046) 7.53 3.0 50.0% feature · violin
Cluster 15 18 NV2.21939 not mapped 7.04 2.9 50.0% feature · violin
Cluster 15 19 NV2.8570 not mapped 2.52 2.7 100.0% feature · violin
Cluster 15 20 XP_001630583.1 (NV2.7661) 1.93 2.7 100.0% feature · violin
Cluster 15 21 NV2.22556 not mapped 4.48 2.7 50.0% feature · violin
Cluster 15 22 XP_001631528.1 (NV2.1709) 1.84 2.5 75.0% feature · violin
Cluster 15 23 XP_032229515.2 (NV2.11161) 2.78 2.4 58.3% feature · violin
Cluster 15 24 XP_001629735.1 (NV2.17224) 2.18 2.4 66.7% feature · violin
Cluster 15 25 XP_001630142.2 (NV2.7915) 2.88 2.4 58.3% feature · violin
Cluster 15 26 XP_001633337.1 (NV2.20247) 2.78 2.4 58.3% feature · violin
Cluster 15 27 XP_001631593.2 (NV2.23891) 2.49 2.4 58.3% feature · violin
Cluster 15 28 XP_048587084.1 (NV2.25005) 3.16 2.4 50.0% feature · violin
Cluster 15 29 XP_032239984.1 (NV2.7354) 2.29 2.3 66.7% feature · violin
Cluster 15 30 XP_001626705.2 (NV2.23689) 5.01 2.3 41.7% feature · violin
Cluster 15 31 XP_001632606.2 (NV2.4442) 2.26 2.3 58.3% feature · violin
Cluster 15 32 XP_032217735.1 (NV2.1174) 2.33 2.3 58.3% feature · violin
Cluster 15 33 XP_032219982.2 (NV2.3019) 2.83 2.3 50.0% feature · violin
Cluster 15 34 XP_001629688.3 (NV2.24033) 1.77 2.2 75.0% feature · violin
Cluster 15 35 XP_032241030.1 (NV2.21894) 4.03 2.2 41.7% feature · violin
Cluster 15 36 NV2.22167 not mapped 2.78 2.2 50.0% feature · violin
Cluster 15 37 NV2.6264 not mapped 1.42 2.2 91.7% feature · violin
Cluster 15 38 NV2.20396 not mapped 2.75 2.2 50.0% feature · violin
Cluster 15 39 NV2.22553 not mapped 4.04 2.2 41.7% feature · violin
Cluster 15 40 NV2.8367 not mapped 2.86 2.2 50.0% feature · violin
Cluster 15 41 XP_001637285.1 (NV2.22408) 2.83 2.2 50.0% feature · violin
Cluster 15 42 XP_032228005.1 (NV2.7614) 1.71 2.2 66.7% feature · violin
Cluster 15 43 XP_001633140.1 (NV2.8273) 3.57 2.1 41.7% feature · violin
Cluster 15 44 XP_001637756.2 (NV2.24122) 2.54 2.1 50.0% feature · violin
Cluster 15 45 NV2.25500 not mapped 3.54 2.1 41.7% feature · violin
Cluster 15 46 XP_001638316.3 (NV2.6134) 3.44 2.1 41.7% feature · violin
Cluster 15 47 NV2.13278 not mapped 3.46 2.1 41.7% feature · violin
Cluster 15 48 XP_001639141.2 (NV2.2894) 3.27 2.1 41.7% feature · violin
Cluster 15 49 XP_001629343.2 (NV2.12640) 1.21 2.0 83.3% feature · violin
Cluster 15 50 NV2.19307 not mapped 1.98 2.0 83.3% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 17 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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