Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Ectoderm11169 Secretory Progenitor1918 Mesoderm1622 Endoderm1615 Neuronal915 Cnidocytes911 Gland Cells894
Cell type Rank Gene log2 FC Score % detected Plot
Cnidocytes 1 XP_032218917.1 (NV2.10686) 8.79 49.8 98.5% feature · violin
Cnidocytes 2 PPIB-like-5 not mapped 8.78 46.7 92.0% feature · violin
Cnidocytes 3 XP_032226109.2 (NV2.13045) 8.12 46.3 91.4% feature · violin
Cnidocytes 4 BRN3-like-1 not mapped 6.01 46.3 93.1% feature · violin
Cnidocytes 5 FKBP2-like-1 not mapped 8.66 46.2 91.2% feature · violin
Cnidocytes 6 OPSD2-like-3 not mapped 6.56 44.9 89.9% feature · violin
Cnidocytes 7 NFH-like-4 not mapped 8.18 44.6 88.5% feature · violin
Cnidocytes 8 XP_032238867.2 (NV2.9534) 6.57 44.0 88.0% feature · violin
Cnidocytes 9 EVA1C-like-3 not mapped 7.86 43.5 86.5% feature · violin
Cnidocytes 10 XP_001641112.2 (NV2.11720) 7.40 42.4 84.2% feature · violin
Cnidocytes 11 GUS-like-1 not mapped 4.21 41.3 88.5% feature · violin
Cnidocytes 12 NV2.23423 not mapped 6.87 40.7 81.2% feature · violin
Cnidocytes 13 P4HTM-like-27 not mapped 8.94 40.5 79.8% feature · violin
Cnidocytes 14 TXD12-like-2 not mapped 7.74 40.1 79.3% feature · violin
Cnidocytes 15 DCX-like-1 not mapped 4.08 38.9 84.9% feature · violin
Ectoderm 1 XP_048577262.1 (NV2.9154) 5.17 106.5 99.4% feature · violin
Ectoderm 2 XP_001628339.1 (NV2.6591) 4.40 104.0 97.9% feature · violin
Ectoderm 3 Actin6 not mapped 3.90 93.3 90.7% feature · violin
Ectoderm 4 CD63-like-12 not mapped 3.94 89.2 86.2% feature · violin
Ectoderm 5 GP2-like-62 not mapped 3.83 86.5 86.2% feature · violin
Ectoderm 6 XP_048577623.1 (NV2.8285) 4.21 83.8 85.1% feature · violin
Ectoderm 7 NV2.12310 not mapped 3.35 79.3 79.5% feature · violin
Ectoderm 8 XP_048590043.1 (NV2.5699) 3.38 77.7 84.7% feature · violin
Ectoderm 9 NV2.9834 not mapped 4.79 77.0 78.4% feature · violin
Ectoderm 10 PCR7-like-1 not mapped 3.26 76.6 81.1% feature · violin
Ectoderm 11 ACTB-like-4 not mapped 2.80 73.9 85.6% feature · violin
Ectoderm 12 CALU-like-8 not mapped 2.92 73.1 85.5% feature · violin
Ectoderm 13 DMBT1-like-28 not mapped 3.09 70.9 74.9% feature · violin
Ectoderm 14 SON-like-3 not mapped 2.62 70.7 81.9% feature · violin
Ectoderm 15 NV2.8570 not mapped 1.33 69.0 100.0% feature · violin
Endoderm 1 FoxA not mapped 5.93 46.3 71.8% feature · violin
Endoderm 2 NV2.6264 not mapped 3.97 42.5 87.4% feature · violin
Endoderm 3 XP_032223871.2 (NV2.639) 2.17 40.7 90.2% feature · violin
Endoderm 4 MELC5 not mapped 2.67 39.3 79.5% feature · violin
Endoderm 5 XP_001633864.1 (NV2.13863) 2.21 37.5 89.7% feature · violin
Endoderm 6 COTL1-like-1 not mapped 2.29 34.4 79.3% feature · violin
Endoderm 7 Nanos2 not mapped 2.12 33.9 76.7% feature · violin
Endoderm 8 ACTC-like-6 not mapped 1.78 33.2 98.1% feature · violin
Endoderm 9 RLA0-like-1 not mapped 0.54 32.1 100.0% feature · violin
Endoderm 10 XP_048575644.1 (NV2.7634) 6.15 31.1 47.7% feature · violin
Endoderm 11 RS25-like-1 not mapped 0.49 31.0 99.9% feature · violin
Endoderm 12 RS2-like-1 not mapped 0.43 29.5 99.9% feature · violin
Endoderm 13 RS13-like-1 not mapped 0.45 29.5 100.0% feature · violin
Endoderm 14 FGF8A not mapped 6.12 29.5 45.3% feature · violin
Endoderm 15 RSPH1-like-4 not mapped 5.46 29.5 45.8% feature · violin
Gland Cells 1 NV2.3425 not mapped 9.28 48.9 97.5% feature · violin
Gland Cells 2 FKB14-like-1 not mapped 8.97 48.6 97.1% feature · violin
Gland Cells 3 NV2.21610 not mapped 8.42 46.9 93.5% feature · violin
Gland Cells 4 ALK-like-1 not mapped 8.62 46.7 93.0% feature · violin
Gland Cells 5 NV2.22820 not mapped 8.83 46.5 92.5% feature · violin
Gland Cells 6 creb-like2 not mapped 5.37 45.5 93.5% feature · violin
Gland Cells 7 AHNK-like-9 not mapped 8.47 44.8 89.4% feature · violin
Gland Cells 8 XP_001625447.3 (NV2.3667) 8.11 44.2 89.1% feature · violin
Gland Cells 9 NV2.7431 not mapped 7.27 42.5 85.0% feature · violin
Gland Cells 10 SPEE-like-2 not mapped 8.65 42.1 83.8% feature · violin
Gland Cells 11 ID4-like-2 not mapped 5.20 42.1 89.7% feature · violin
Gland Cells 12 CSC1-like-1 not mapped 4.92 42.1 87.6% feature · violin
Gland Cells 13 NV2.5209 not mapped 6.73 42.1 84.9% feature · violin
Gland Cells 14 NOT2-like-4 not mapped 8.60 41.6 82.8% feature · violin
Gland Cells 15 XP_001635203.1 (NV2.18211) 4.40 41.4 89.7% feature · violin
Mesoderm 1 NV2.6264 not mapped 6.65 63.6 99.9% feature · violin
Mesoderm 2 MCPI-like-1 not mapped 6.57 63.4 96.5% feature · violin
Mesoderm 3 COTL1-like-1 not mapped 4.39 61.6 98.6% feature · violin
Mesoderm 4 ACTC-like-6 not mapped 2.92 55.7 99.8% feature · violin
Mesoderm 5 RS2-like-1 not mapped 0.90 55.3 100.0% feature · violin
Mesoderm 6 VKT2-like-1 not mapped 6.98 53.8 81.8% feature · violin
Mesoderm 7 FRIS-like-8 not mapped 5.92 52.8 82.0% feature · violin
Mesoderm 8 RL26-like-1 not mapped 0.88 52.2 100.0% feature · violin
Mesoderm 9 TIL-like-1 not mapped 5.05 52.1 83.0% feature · violin
Mesoderm 10 SPRC-like-10 not mapped 7.25 51.9 78.9% feature · violin
Mesoderm 11 RS27-like-1 not mapped 0.82 51.0 100.0% feature · violin
Mesoderm 12 NV2.14515 not mapped 3.57 50.0 88.3% feature · violin
Mesoderm 13 RS26-like-1 not mapped 0.70 49.1 100.0% feature · violin
Mesoderm 14 HEBP2-like-1 not mapped 6.97 48.7 74.1% feature · violin
Mesoderm 15 RLA2-like-1 not mapped 0.75 48.7 100.0% feature · violin
Neuronal 1 GBGE-like-1 not mapped 4.77 36.0 76.4% feature · violin
Neuronal 2 KAPR-like-14 not mapped 4.01 33.4 74.4% feature · violin
Neuronal 3 P5I11-like-1 not mapped 3.23 26.3 62.3% feature · violin
Neuronal 4 Tpm3 not mapped 4.29 25.8 54.9% feature · violin
Neuronal 5 CD151-like-2 not mapped 4.07 25.5 56.1% feature · violin
Neuronal 6 SEGN-like-1 not mapped 4.85 25.2 52.5% feature · violin
Neuronal 7 INSM1-like-1 not mapped 3.65 24.0 55.5% feature · violin
Neuronal 8 CCNI-like-1 not mapped 1.46 23.1 88.7% feature · violin
Neuronal 9 MCFD2-like-2 not mapped 2.21 22.9 65.8% feature · violin
Neuronal 10 KAPC1-like-1 not mapped 2.03 22.6 69.0% feature · violin
Neuronal 11 ID4-like-2 not mapped 2.72 22.3 56.9% feature · violin
Neuronal 12 NV2.13752 not mapped 6.63 22.3 44.3% feature · violin
Neuronal 13 NV2.14774 not mapped 6.88 22.2 44.6% feature · violin
Neuronal 14 AshA not mapped 5.79 21.8 44.2% feature · violin
Neuronal 15 MTF2-like-1 not mapped 3.48 21.6 49.3% feature · violin
Secretory Progenitor 1 XP_001633864.1 (NV2.13863) 3.21 54.4 97.0% feature · violin
Secretory Progenitor 2 SoxC not mapped 2.89 42.3 77.0% feature · violin
Secretory Progenitor 3 NV2.9336 not mapped 3.26 35.6 59.6% feature · violin
Secretory Progenitor 4 myc1 not mapped 2.81 32.0 56.2% feature · violin
Secretory Progenitor 5 XP_001623650.2 (NV2.16803) 1.22 29.4 90.4% feature · violin
Secretory Progenitor 6 CH10-like-1 not mapped 1.08 29.1 94.2% feature · violin
Secretory Progenitor 7 HSP7C-like-1 not mapped 1.46 27.3 86.4% feature · violin
Secretory Progenitor 8 IF2P-like-1 not mapped 1.12 27.0 88.9% feature · violin
Secretory Progenitor 9 MARH1-like-1 not mapped 2.79 26.7 46.1% feature · violin
Secretory Progenitor 10 HS90A-like-1 not mapped 1.37 26.0 90.4% feature · violin
Secretory Progenitor 11 NDKB-like-2 not mapped 0.60 25.7 99.3% feature · violin
Secretory Progenitor 12 IF5A-like-1 not mapped 0.52 25.7 99.5% feature · violin
Secretory Progenitor 13 CATL-like-3 not mapped 1.49 25.6 83.1% feature · violin
Secretory Progenitor 14 CDN1A-like-1 not mapped 1.75 24.8 61.3% feature · violin
Secretory Progenitor 15 PSB3-like-1 not mapped 0.94 23.8 86.1% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 90 of the 105 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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