Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Ectoderm11169 Secretory Progenitor1918 Mesoderm1622 Endoderm1615 Neuronal915 Cnidocytes911 Gland Cells894

Showing the cell type that GATA is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Neuronal 1 GBGE-like-1 not mapped 4.77 36.0 76.4% feature · violin
Neuronal 2 KAPR-like-14 not mapped 4.01 33.4 74.4% feature · violin
Neuronal 3 P5I11-like-1 not mapped 3.23 26.3 62.3% feature · violin
Neuronal 4 Tpm3 not mapped 4.29 25.8 54.9% feature · violin
Neuronal 5 CD151-like-2 not mapped 4.07 25.5 56.1% feature · violin
Neuronal 6 SEGN-like-1 not mapped 4.85 25.2 52.5% feature · violin
Neuronal 7 INSM1-like-1 not mapped 3.65 24.0 55.5% feature · violin
Neuronal 8 CCNI-like-1 not mapped 1.46 23.1 88.7% feature · violin
Neuronal 9 MCFD2-like-2 not mapped 2.21 22.9 65.8% feature · violin
Neuronal 10 KAPC1-like-1 not mapped 2.03 22.6 69.0% feature · violin
Neuronal 11 ID4-like-2 not mapped 2.72 22.3 56.9% feature · violin
Neuronal 12 NV2.13752 not mapped 6.63 22.3 44.3% feature · violin
Neuronal 13 NV2.14774 not mapped 6.88 22.2 44.6% feature · violin
Neuronal 14 AshA not mapped 5.79 21.8 44.2% feature · violin
Neuronal 15 MTF2-like-1 not mapped 3.48 21.6 49.3% feature · violin
Neuronal 16 THIO-like-1 not mapped 4.50 21.3 46.6% feature · violin
Neuronal 17 XP_001632763.1 (NV2.10366) 5.72 21.0 42.4% feature · violin
Neuronal 18 C9MT-like-1 not mapped 2.35 21.0 56.7% feature · violin
Neuronal 19 XP_001633864.1 (NV2.13863) 1.97 20.7 76.1% feature · violin
Neuronal 20 YPEL1-like-1 not mapped 2.54 19.8 52.8% feature · violin
Neuronal 21 SH3L3-like-1 not mapped 1.92 19.5 60.9% feature · violin
Neuronal 22 KCTD8-like-1 not mapped 4.32 19.5 41.0% feature · violin
Neuronal 23 SPCS1-like-1 not mapped 1.18 19.2 83.8% feature · violin
Neuronal 24 NV2.22415 not mapped 3.30 19.1 43.4% feature · violin
Neuronal 25 NV2.8475 not mapped 1.51 18.9 71.9% feature · violin
Neuronal 26 XP_032235358.1 (NV2.9104) 2.84 18.4 44.7% feature · violin
Neuronal 27 TRPV5-like-1 not mapped 2.95 18.4 43.8% feature · violin
Neuronal 28 ABCA2-like-1 not mapped 2.29 18.2 51.7% feature · violin
Neuronal 29 RGS19-like-1 not mapped 4.39 18.2 38.4% feature · violin
Neuronal 30 Atonal-like not mapped 3.33 17.7 40.1% feature · violin
Neuronal 31 MELC6 not mapped 2.57 17.5 44.0% feature · violin
Neuronal 32 DCX-like-1 not mapped 2.04 17.5 51.7% feature · violin
Neuronal 33 UFM1-like-1 not mapped 0.95 17.4 85.7% feature · violin
Neuronal 34 PTN13-like-2 not mapped 3.66 17.1 37.6% feature · violin
Neuronal 35 KCNA2-like-4 not mapped 4.14 16.5 35.0% feature · violin
Neuronal 36 CALM3-like-1 not mapped 3.48 16.4 36.8% feature · violin
Neuronal 37 AshD not mapped 5.74 16.2 32.7% feature · violin
Neuronal 38 XP_048589600.1 (NV2.3319) 5.01 16.2 35.1% feature · violin
Neuronal 39 NV2.7732 not mapped 4.70 16.1 33.2% feature · violin
Neuronal 40 NV2.14259 not mapped 2.56 16.0 41.7% feature · violin
Neuronal 41 SoxC not mapped 1.68 15.8 55.2% feature · violin
Neuronal 42 NV2.21718 not mapped 2.18 15.6 43.7% feature · violin
Neuronal 43 KCD16-like-1 not mapped 5.21 15.5 31.6% feature · violin
Neuronal 44 XP_001635203.1 (NV2.18211) 1.97 15.4 46.6% feature · violin
Neuronal 45 ZC4H2-like-1 not mapped 3.01 15.4 36.4% feature · violin
Neuronal 46 NV2.3318 not mapped 5.53 15.3 31.7% feature · violin
Neuronal 47 Elav1 not mapped 3.91 15.3 33.2% feature · violin
Neuronal 48 SH3G3-like-3 not mapped 5.91 15.2 30.7% feature · violin
Neuronal 49 NCAH-like-1 not mapped 1.39 15.0 63.1% feature · violin
Neuronal 50 GATA not mapped 4.62 15.0 31.5% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 45 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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