Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Ectoderm11169 Secretory Progenitor1918 Mesoderm1622 Endoderm1615 Neuronal915 Cnidocytes911 Gland Cells894

Showing the cell type that Nanos2 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Endoderm 1 FoxA not mapped 5.93 46.3 71.8% feature · violin
Endoderm 2 NV2.6264 not mapped 3.97 42.5 87.4% feature · violin
Endoderm 3 XP_032223871.2 (NV2.639) 2.17 40.7 90.2% feature · violin
Endoderm 4 MELC5 not mapped 2.67 39.3 79.5% feature · violin
Endoderm 5 XP_001633864.1 (NV2.13863) 2.21 37.5 89.7% feature · violin
Endoderm 6 COTL1-like-1 not mapped 2.29 34.4 79.3% feature · violin
Endoderm 7 Nanos2 not mapped 2.12 33.9 76.7% feature · violin
Endoderm 8 ACTC-like-6 not mapped 1.78 33.2 98.1% feature · violin
Endoderm 9 RLA0-like-1 not mapped 0.54 32.1 100.0% feature · violin
Endoderm 10 XP_048575644.1 (NV2.7634) 6.15 31.1 47.7% feature · violin
Endoderm 11 RS25-like-1 not mapped 0.49 31.0 99.9% feature · violin
Endoderm 12 RS2-like-1 not mapped 0.43 29.5 99.9% feature · violin
Endoderm 13 RS13-like-1 not mapped 0.45 29.5 100.0% feature · violin
Endoderm 14 FGF8A not mapped 6.12 29.5 45.3% feature · violin
Endoderm 15 RSPH1-like-4 not mapped 5.46 29.5 45.8% feature · violin
Endoderm 16 RS26-like-1 not mapped 0.42 29.4 99.9% feature · violin
Endoderm 17 RLA1-like-1 not mapped 0.43 29.3 99.9% feature · violin
Endoderm 18 RS14-like-1 not mapped 0.42 29.3 100.0% feature · violin
Endoderm 19 RS12-like-1 not mapped 0.45 29.0 99.9% feature · violin
Endoderm 20 RS9-like-1 not mapped 0.40 28.5 100.0% feature · violin
Endoderm 21 NV2.24723 not mapped 1.20 28.1 97.2% feature · violin
Endoderm 22 NV2.21203 not mapped 2.86 28.0 52.3% feature · violin
Endoderm 23 hhex not mapped 4.52 27.9 45.0% feature · violin
Endoderm 24 RL27A-like-1 not mapped 0.39 27.7 99.9% feature · violin
Endoderm 25 RS8-like-1 not mapped 0.41 27.5 99.9% feature · violin
Endoderm 26 RS15-like-1 not mapped 0.38 27.4 100.0% feature · violin
Endoderm 27 RS18-like-1 not mapped 0.43 27.0 100.0% feature · violin
Endoderm 28 Glutathione not mapped 2.44 27.0 54.0% feature · violin
Endoderm 29 RL17-like-1 not mapped 0.38 27.0 99.9% feature · violin
Endoderm 30 NV2.1052 not mapped 2.47 26.9 55.3% feature · violin
Endoderm 31 RL3-like-1 not mapped 0.55 26.8 99.7% feature · violin
Endoderm 32 RS15A-like-1 not mapped 0.37 26.7 99.9% feature · violin
Endoderm 33 RNF43 not mapped 2.43 26.7 53.9% feature · violin
Endoderm 34 ACTP-like-1 not mapped 1.43 26.7 84.8% feature · violin
Endoderm 35 NV2.5747 not mapped 3.02 26.7 48.9% feature · violin
Endoderm 36 RL5-like-4 not mapped 0.65 26.6 99.3% feature · violin
Endoderm 37 RS24-like-1 not mapped 0.39 26.4 100.0% feature · violin
Endoderm 38 RLA2-like-1 not mapped 0.41 26.0 100.0% feature · violin
Endoderm 39 RS20-like-1 not mapped 0.37 25.9 99.9% feature · violin
Endoderm 40 RS10-like-1 not mapped 0.35 25.8 100.0% feature · violin
Endoderm 41 RL26-like-1 not mapped 0.43 25.8 99.9% feature · violin
Endoderm 42 RACK1-like-1 not mapped 0.44 25.8 100.0% feature · violin
Endoderm 43 RS16-like-1 not mapped 0.38 25.8 100.0% feature · violin
Endoderm 44 RL9-like-1 not mapped 0.38 25.7 99.9% feature · violin
Endoderm 45 RS21-like-1 not mapped 0.40 25.7 100.0% feature · violin
Endoderm 46 RS27-like-1 not mapped 0.41 25.6 100.0% feature · violin
Endoderm 47 RL13-like-1 not mapped 0.39 25.3 100.0% feature · violin
Endoderm 48 RS11-like-2 not mapped 0.41 25.3 100.0% feature · violin
Endoderm 49 RL18A-like-1 not mapped 0.38 25.3 100.0% feature · violin
Endoderm 50 RL7A-like-1 not mapped 0.43 24.9 99.9% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 47 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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