Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Cluster 53055 Cluster 11266 Cluster 4930 Cluster 0506 Cluster 2365 Cluster 3313 Cluster 6290 Cluster 7265 Cluster 13241 Cluster 11167 Cluster 8135 Cluster 1696 Cluster 1473 Cluster 970 Cluster 1260 Cluster 1546 Cluster 1741 Cluster 1832 Cluster 1026
This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.
Cell type Rank Gene log2 FC Score % detected Plot
Cluster 0 1 NV2.22761 2.41 18.2 82.4% feature · violin
Cluster 0 2 NV2.17759 1.60 17.2 93.7% feature · violin
Cluster 0 3 NV2.16121 2.53 17.0 74.5% feature · violin
Cluster 0 4 NV2.11974 1.88 15.1 85.6% feature · violin
Cluster 0 5 NV2.6876 1.16 13.4 90.3% feature · violin
Cluster 0 6 NV2.3883 1.04 12.8 96.0% feature · violin
Cluster 0 7 NV2.24326 0.92 12.7 96.6% feature · violin
Cluster 0 8 NV2.22180 0.96 12.2 94.7% feature · violin
Cluster 0 9 NV2.11038 0.56 12.2 99.2% feature · violin
Cluster 0 10 NV2.12123 0.69 11.5 95.8% feature · violin
Cluster 0 11 NV2.22034 0.79 10.8 87.5% feature · violin
Cluster 0 12 NV2.6651 1.01 10.8 91.1% feature · violin
Cluster 0 13 NV2.23687 0.94 10.5 87.7% feature · violin
Cluster 0 14 NV2.11636 0.94 10.0 85.0% feature · violin
Cluster 0 15 NV2.14792 0.67 9.9 93.3% feature · violin
Cluster 1 1 NV2.11974 2.09 25.4 85.4% feature · violin
Cluster 1 2 NV2.17759 1.48 23.4 91.4% feature · violin
Cluster 1 3 NV2.7107 0.94 21.4 96.9% feature · violin
Cluster 1 4 NV2.11038 0.65 20.9 99.5% feature · violin
Cluster 1 5 NV2.12123 0.76 19.2 95.7% feature · violin
Cluster 1 6 NV2.22180 0.98 19.1 93.8% feature · violin
Cluster 1 7 NV2.24326 0.83 19.0 94.2% feature · violin
Cluster 1 8 NV2.3883 0.86 18.4 91.9% feature · violin
Cluster 1 9 NV2.6876 0.99 18.0 87.0% feature · violin
Cluster 1 10 NV2.6921 1.06 17.7 88.7% feature · violin
Cluster 1 11 NV2.15684 0.78 17.2 95.3% feature · violin
Cluster 1 12 NV2.23687 1.00 16.8 87.1% feature · violin
Cluster 1 13 NV2.11636 1.00 16.7 84.0% feature · violin
Cluster 1 14 NV2.14792 0.81 16.5 94.9% feature · violin
Cluster 1 15 NV2.7821 0.69 16.5 95.0% feature · violin
Cluster 10 1 NV2.17846 8.57 8.4 96.2% feature · violin
Cluster 10 2 NV2.7107 0.99 3.9 96.2% feature · violin
Cluster 10 3 NV2.4713 2.05 3.7 76.9% feature · violin
Cluster 10 4 NV2.11974 1.68 3.4 80.8% feature · violin
Cluster 10 5 NV2.1189 1.16 3.1 96.2% feature · violin
Cluster 10 6 NV2.11038 0.60 3.0 100.0% feature · violin
Cluster 10 7 NV2.20247 1.55 2.9 84.6% feature · violin
Cluster 10 8 NV2.23824 1.86 2.9 61.5% feature · violin
Cluster 10 9 NV2.15684 0.82 2.8 96.2% feature · violin
Cluster 10 10 NV2.13087 2.18 2.8 50.0% feature · violin
Cluster 10 11 NV2.1171 2.12 2.7 50.0% feature · violin
Cluster 10 12 NV2.13117 2.00 2.7 53.8% feature · violin
Cluster 10 13 NV2.1062 1.32 2.7 92.3% feature · violin
Cluster 10 14 NV2.6419 1.04 2.7 96.2% feature · violin
Cluster 10 15 NV2.22553 1.60 2.7 65.4% feature · violin
Cluster 11 1 NV2.17759 1.57 9.6 95.8% feature · violin
Cluster 11 2 NV2.11974 1.77 8.5 85.6% feature · violin
Cluster 11 3 NV2.22180 1.05 7.8 96.4% feature · violin
Cluster 11 4 NV2.24326 0.99 7.8 98.2% feature · violin
Cluster 11 5 NV2.6876 1.02 6.6 89.8% feature · violin
Cluster 11 6 NV2.11038 0.58 6.5 100.0% feature · violin
Cluster 11 7 NV2.15684 0.80 6.4 97.0% feature · violin
Cluster 11 8 NV2.17125 1.06 6.3 89.8% feature · violin
Cluster 11 9 NV2.533 1.50 6.1 64.7% feature · violin
Cluster 11 10 NV2.11636 1.14 6.1 91.0% feature · violin
Cluster 11 11 NV2.12123 0.65 6.0 96.4% feature · violin
Cluster 11 12 NV2.15226 0.72 5.9 95.2% feature · violin
Cluster 11 13 NV2.23687 0.94 5.9 89.2% feature · violin
Cluster 11 14 NV2.22034 0.95 5.7 94.0% feature · violin
Cluster 11 15 NV2.6921 0.93 5.7 90.4% feature · violin
Cluster 12 1 NV2.19485 8.67 12.6 95.0% feature · violin
Cluster 12 2 NV2.5358 7.97 12.5 96.7% feature · violin
Cluster 12 3 NV2.10038 8.17 12.1 91.7% feature · violin
Cluster 12 4 NV2.25851 8.27 11.4 86.7% feature · violin
Cluster 12 5 NV2.17429 8.32 11.2 85.0% feature · violin
Cluster 12 6 NV2.14921 6.68 10.5 81.7% feature · violin
Cluster 12 7 NV2.2666 7.28 10.0 76.7% feature · violin
Cluster 12 8 NV2.740 7.02 8.1 61.7% feature · violin
Cluster 12 9 NV2.10279 9.25 7.8 58.3% feature · violin
Cluster 12 10 NV2.25847 8.54 7.7 58.3% feature · violin
Cluster 12 11 NV2.21677 5.25 7.6 61.7% feature · violin
Cluster 12 12 NV2.17605 5.79 6.6 51.7% feature · violin
Cluster 12 13 NV2.2655 3.33 6.3 60.0% feature · violin
Cluster 12 14 NV2.10281 7.32 6.2 46.7% feature · violin
Cluster 12 15 NV2.21678 4.90 6.2 50.0% feature · violin
Cluster 13 1 NV2.2930 5.83 17.4 69.3% feature · violin
Cluster 13 2 NV2.19908 3.18 12.3 60.6% feature · violin
Cluster 13 3 NV2.8437 5.73 12.2 48.5% feature · violin
Cluster 13 4 NV2.20203 0.95 12.0 97.9% feature · violin
Cluster 13 5 NV2.16324 4.54 11.6 50.2% feature · violin
Cluster 13 6 NV2.18830 3.43 11.5 54.4% feature · violin
Cluster 13 7 NV2.4239 2.40 11.3 66.0% feature · violin
Cluster 13 8 NV2.19306 1.49 11.1 88.0% feature · violin
Cluster 13 9 NV2.17885 5.59 10.7 41.9% feature · violin
Cluster 13 10 NV2.20515 2.55 10.3 58.1% feature · violin
Cluster 13 11 NV2.17450 6.22 10.2 39.4% feature · violin
Cluster 13 12 NV2.24576 2.31 10.1 61.8% feature · violin
Cluster 13 13 NV2.25004 2.73 9.9 51.5% feature · violin
Cluster 13 14 NV2.8699 2.19 9.7 61.0% feature · violin
Cluster 13 15 NV2.12829 2.49 9.7 54.4% feature · violin
Cluster 14 1 NV2.15362 9.47 10.8 74.0% feature · violin
Cluster 14 2 NV2.4019 7.84 10.7 74.0% feature · violin
Cluster 14 3 NV2.17494 9.21 10.6 72.6% feature · violin
Cluster 14 4 NV2.20054 2.44 5.7 60.3% feature · violin
Cluster 14 5 NV2.22761 2.03 5.4 71.2% feature · violin
Cluster 14 6 NV2.12087 2.38 5.4 61.6% feature · violin
Cluster 14 7 NV2.4590 5.34 5.2 37.0% feature · violin
Cluster 14 8 NV2.13562 4.04 4.9 37.0% feature · violin
Cluster 14 9 NV2.1654 1.73 4.8 67.1% feature · violin
Cluster 14 10 NV2.12640 1.16 4.7 86.3% feature · violin
Cluster 14 11 NV2.19306 1.13 4.7 83.6% feature · violin
Cluster 14 12 NV2.12829 2.16 4.7 50.7% feature · violin
Cluster 14 13 NV2.23891 1.89 4.6 56.2% feature · violin
Cluster 14 14 NV2.7915 2.02 4.6 57.5% feature · violin
Cluster 14 15 NV2.24576 1.98 4.6 54.8% feature · violin
Cluster 15 1 NV2.3425 7.47 11.3 97.8% feature · violin
Cluster 15 2 NV2.6785 7.47 9.7 84.8% feature · violin
Cluster 15 3 NV2.12904 7.32 9.4 82.6% feature · violin
Cluster 15 4 NV2.11564 6.97 9.4 82.6% feature · violin
Cluster 15 5 NV2.12902 9.02 8.8 76.1% feature · violin
Cluster 15 6 NV2.21610 7.89 8.5 73.9% feature · violin
Cluster 15 7 NV2.12903 8.32 8.0 69.6% feature · violin
Cluster 15 8 NV2.14921 5.54 7.5 69.6% feature · violin
Cluster 15 9 NV2.1249 2.78 7.0 95.7% feature · violin
Cluster 15 10 NV2.21677 6.03 6.9 63.0% feature · violin
Cluster 15 11 NV2.21678 5.68 6.7 60.9% feature · violin
Cluster 15 12 NV2.20203 1.06 5.8 100.0% feature · violin
Cluster 15 13 NV2.10277 2.33 5.8 87.0% feature · violin
Cluster 15 14 NV2.19057 6.74 5.7 50.0% feature · violin
Cluster 15 15 NV2.6419 1.55 5.3 100.0% feature · violin
Cluster 16 1 NV2.23363 9.38 10.3 61.5% feature · violin
Cluster 16 2 NV2.11082 9.35 8.7 52.1% feature · violin
Cluster 16 3 NV2.18817 2.05 5.8 79.2% feature · violin
Cluster 16 4 NV2.3425 1.99 5.4 58.3% feature · violin
Cluster 16 5 NV2.11816 1.82 5.0 75.0% feature · violin
Cluster 16 6 NV2.19607 1.40 4.9 78.1% feature · violin
Cluster 16 7 NV2.8119 1.63 4.8 68.8% feature · violin
Cluster 16 8 NV2.3269 5.36 4.7 29.2% feature · violin
Cluster 16 9 NV2.7661 1.31 4.6 84.4% feature · violin
Cluster 16 10 NV2.19682 0.67 4.1 96.9% feature · violin
Cluster 16 11 NV2.11721 1.38 4.1 63.5% feature · violin
Cluster 16 12 NV2.13683 1.55 4.0 72.9% feature · violin
Cluster 16 13 NV2.1445 2.85 3.6 27.1% feature · violin
Cluster 16 14 NV2.2165 0.87 3.1 61.5% feature · violin
Cluster 16 15 NV2.10686 1.11 3.0 60.4% feature · violin
Cluster 17 1 NV2.12623 7.68 10.5 97.6% feature · violin
Cluster 17 2 NV2.12621 7.15 9.6 90.2% feature · violin
Cluster 17 3 NV2.10686 4.98 9.3 97.6% feature · violin
Cluster 17 4 NV2.10343 7.60 9.2 85.4% feature · violin
Cluster 17 5 NV2.20021 7.04 8.9 82.9% feature · violin
Cluster 17 6 NV2.6716 8.95 8.8 80.5% feature · violin
Cluster 17 7 NV2.20489 7.29 8.4 78.0% feature · violin
Cluster 17 8 NV2.9746 5.82 8.4 82.9% feature · violin
Cluster 17 9 NV2.11801 6.85 8.3 78.0% feature · violin
Cluster 17 10 NV2.11815 5.24 8.1 85.4% feature · violin
Cluster 17 11 NV2.9990 6.09 7.2 68.3% feature · violin
Cluster 17 12 NV2.11814 5.34 7.0 68.3% feature · violin
Cluster 17 13 NV2.25695 6.36 6.7 63.4% feature · violin
Cluster 17 14 NV2.16606 4.51 6.5 65.9% feature · violin
Cluster 17 15 NV2.23668 4.32 6.3 65.9% feature · violin
Cluster 18 1 NV2.156 10.74 9.1 93.8% feature · violin
Cluster 18 2 NV2.7661 4.27 8.6 96.9% feature · violin
Cluster 18 3 NV2.2881 3.77 8.4 96.9% feature · violin
Cluster 18 4 NV2.8119 4.35 7.3 93.8% feature · violin
Cluster 18 5 NV2.14540 10.09 7.0 71.9% feature · violin
Cluster 18 6 NV2.6264 2.88 6.8 96.9% feature · violin
Cluster 18 7 NV2.25312 3.97 6.1 75.0% feature · violin
Cluster 18 8 NV2.20203 1.02 5.6 93.8% feature · violin
Cluster 18 9 NV2.17049 3.57 5.6 71.9% feature · violin
Cluster 18 10 NV2.10670 5.39 5.2 56.2% feature · violin
Cluster 18 11 NV2.5353 3.21 5.1 75.0% feature · violin
Cluster 18 12 NV2.1062 2.05 5.1 96.9% feature · violin
Cluster 18 13 NV2.8516 4.42 4.9 56.2% feature · violin
Cluster 18 14 NV2.12194 7.22 4.8 50.0% feature · violin
Cluster 18 15 NV2.17078 2.69 4.7 71.9% feature · violin
Cluster 2 1 NV2.3734 4.27 25.2 93.7% feature · violin
Cluster 2 2 NV2.10172 4.51 24.8 88.5% feature · violin
Cluster 2 3 NV2.6264 3.16 24.0 97.3% feature · violin
Cluster 2 4 NV2.7661 3.08 23.2 95.3% feature · violin
Cluster 2 5 NV2.19682 2.52 22.8 99.5% feature · violin
Cluster 2 6 NV2.5860 3.23 22.4 92.1% feature · violin
Cluster 2 7 NV2.7911 4.29 21.6 79.2% feature · violin
Cluster 2 8 NV2.914 4.58 20.8 77.5% feature · violin
Cluster 2 9 NV2.19701 3.11 20.5 87.4% feature · violin
Cluster 2 10 NV2.19607 2.85 20.1 87.7% feature · violin
Cluster 2 11 NV2.14367 4.41 19.4 70.7% feature · violin
Cluster 2 12 NV2.20475 3.51 19.0 80.0% feature · violin
Cluster 2 13 NV2.22684 4.44 17.2 60.5% feature · violin
Cluster 2 14 NV2.74 4.94 16.8 57.0% feature · violin
Cluster 2 15 NV2.23229 4.51 16.5 57.5% feature · violin
Cluster 3 1 NV2.1969 2.61 11.6 58.1% feature · violin
Cluster 3 2 NV2.1062 1.18 8.9 86.3% feature · violin
Cluster 3 3 NV2.18168 2.04 8.6 47.3% feature · violin
Cluster 3 4 NV2.805 1.87 8.2 48.6% feature · violin
Cluster 3 5 NV2.20761 1.47 8.1 62.3% feature · violin
Cluster 3 6 NV2.23463 1.95 7.5 41.9% feature · violin
Cluster 3 7 NV2.24576 1.57 7.3 48.9% feature · violin
Cluster 3 8 NV2.13538 2.00 7.2 37.7% feature · violin
Cluster 3 9 NV2.2719 4.94 7.1 24.9% feature · violin
Cluster 3 10 NV2.25738 2.77 7.0 29.7% feature · violin
Cluster 3 11 NV2.4812 2.49 7.0 31.9% feature · violin
Cluster 3 12 NV2.7915 1.44 6.8 49.8% feature · violin
Cluster 3 13 NV2.20765 1.57 6.7 44.4% feature · violin
Cluster 3 14 NV2.9961 5.73 6.7 23.0% feature · violin
Cluster 3 15 NV2.18830 2.04 6.6 34.2% feature · violin
Cluster 4 1 NV2.15016 4.17 28.1 67.2% feature · violin
Cluster 4 2 NV2.9154 3.90 25.3 61.4% feature · violin
Cluster 4 3 NV2.11974 2.33 24.6 91.3% feature · violin
Cluster 4 4 NV2.21485 3.20 22.8 61.9% feature · violin
Cluster 4 5 NV2.4721 1.68 18.0 87.6% feature · violin
Cluster 4 6 NV2.11038 0.61 17.6 99.2% feature · violin
Cluster 4 7 NV2.17759 1.42 17.6 94.3% feature · violin
Cluster 4 8 NV2.10538 3.51 17.2 41.4% feature · violin
Cluster 4 9 NV2.18761 2.02 17.2 64.2% feature · violin
Cluster 4 10 NV2.4713 1.75 16.5 73.2% feature · violin
Cluster 4 11 NV2.22411 1.08 16.0 93.9% feature · violin
Cluster 4 12 NV2.22180 0.95 15.6 94.9% feature · violin
Cluster 4 13 NV2.10759 1.87 14.9 57.3% feature · violin
Cluster 4 14 NV2.1249 1.36 13.7 79.0% feature · violin
Cluster 4 15 NV2.533 1.55 13.7 63.3% feature · violin
Cluster 5 1 NV2.11816 6.03 65.6 97.8% feature · violin
Cluster 5 2 NV2.18817 6.12 64.7 99.8% feature · violin
Cluster 5 3 NV2.13683 5.74 62.0 96.2% feature · violin
Cluster 5 4 NV2.10686 5.02 55.1 88.2% feature · violin
Cluster 5 5 NV2.11721 4.87 54.7 87.0% feature · violin
Cluster 5 6 NV2.19682 1.86 49.5 99.1% feature · violin
Cluster 5 7 NV2.11815 4.84 45.0 66.2% feature · violin
Cluster 5 8 NV2.3425 4.67 43.3 64.8% feature · violin
Cluster 5 9 NV2.8119 3.21 38.6 71.8% feature · violin
Cluster 5 10 NV2.5200 3.91 37.8 61.0% feature · violin
Cluster 5 11 NV2.6264 2.23 37.4 86.5% feature · violin
Cluster 5 12 NV2.11802 3.54 35.0 58.6% feature · violin
Cluster 5 13 NV2.7661 2.06 33.4 82.6% feature · violin
Cluster 5 14 NV2.11723 3.48 32.1 53.0% feature · violin
Cluster 5 15 NV2.12945 2.35 30.4 94.5% feature · violin
Cluster 6 1 NV2.50 6.73 22.7 83.4% feature · violin
Cluster 6 2 NV2.22547 2.63 22.6 99.7% feature · violin
Cluster 6 3 NV2.14941 5.92 20.9 78.3% feature · violin
Cluster 6 4 NV2.24159 7.35 20.8 73.4% feature · violin
Cluster 6 5 NV2.24641 7.32 20.4 72.8% feature · violin
Cluster 6 6 NV2.11584 6.17 19.2 70.0% feature · violin
Cluster 6 7 NV2.160 6.87 17.5 62.8% feature · violin
Cluster 6 8 NV2.15601 6.86 17.3 61.4% feature · violin
Cluster 6 9 NV2.25609 7.73 15.9 55.5% feature · violin
Cluster 6 10 NV2.187 5.85 15.4 55.9% feature · violin
Cluster 6 11 NV2.4072 3.52 15.2 67.6% feature · violin
Cluster 6 12 NV2.20515 3.37 14.4 63.8% feature · violin
Cluster 6 13 NV2.2713 1.84 13.9 85.2% feature · violin
Cluster 6 14 NV2.19749 5.72 13.9 50.3% feature · violin
Cluster 6 15 NV2.25610 7.43 13.9 48.6% feature · violin
Cluster 7 1 NV2.18817 5.85 25.4 100.0% feature · violin
Cluster 7 2 NV2.13683 5.35 24.1 98.9% feature · violin
Cluster 7 3 NV2.11802 5.89 24.0 94.3% feature · violin
Cluster 7 4 NV2.10686 5.29 23.2 95.1% feature · violin
Cluster 7 5 NV2.11720 5.36 23.1 92.5% feature · violin
Cluster 7 6 NV2.11721 4.76 21.9 95.5% feature · violin
Cluster 7 7 NV2.10115 5.28 20.6 83.4% feature · violin
Cluster 7 8 NV2.12690 5.54 19.9 77.4% feature · violin
Cluster 7 9 NV2.11821 5.63 19.8 77.0% feature · violin
Cluster 7 10 NV2.11723 4.66 19.3 83.4% feature · violin
Cluster 7 11 NV2.14012 5.66 19.2 74.0% feature · violin
Cluster 7 12 NV2.5200 4.00 18.1 83.4% feature · violin
Cluster 7 13 NV2.16293 4.90 17.3 69.4% feature · violin
Cluster 7 14 NV2.11819 4.51 16.8 69.4% feature · violin
Cluster 7 15 NV2.11816 3.87 15.3 85.3% feature · violin
Cluster 8 1 NV2.8119 7.46 19.5 98.5% feature · violin
Cluster 8 2 NV2.17681 8.11 19.2 97.0% feature · violin
Cluster 8 3 NV2.5271 7.93 19.0 96.3% feature · violin
Cluster 8 4 NV2.19894 7.47 18.5 94.1% feature · violin
Cluster 8 5 NV2.17732 6.03 18.0 93.3% feature · violin
Cluster 8 6 NV2.8024 6.78 17.9 93.3% feature · violin
Cluster 8 7 NV2.8895 7.83 17.9 91.1% feature · violin
Cluster 8 8 NV2.8828 7.87 17.6 89.6% feature · violin
Cluster 8 9 NV2.18989 6.32 17.2 90.4% feature · violin
Cluster 8 10 NV2.19114 7.90 16.0 81.5% feature · violin
Cluster 8 11 NV2.23535 5.47 15.8 84.4% feature · violin
Cluster 8 12 NV2.11447 7.09 13.7 70.4% feature · violin
Cluster 8 13 NV2.17940 7.89 13.7 69.6% feature · violin
Cluster 8 14 NV2.9092 7.43 13.7 69.6% feature · violin
Cluster 8 15 NV2.6403 5.93 13.7 71.9% feature · violin
Cluster 9 1 NV2.3308 10.98 13.6 94.3% feature · violin
Cluster 9 2 NV2.3427 9.90 12.3 85.7% feature · violin
Cluster 9 3 NV2.11730 8.69 8.8 61.4% feature · violin
Cluster 9 4 NV2.9156 7.51 8.3 58.6% feature · violin
Cluster 9 5 NV2.17613 9.29 7.4 51.4% feature · violin
Cluster 9 6 NV2.20203 1.10 7.0 100.0% feature · violin
Cluster 9 7 NV2.11726 9.16 6.8 47.1% feature · violin
Cluster 9 8 NV2.17605 7.06 6.7 47.1% feature · violin
Cluster 9 9 NV2.15444 6.69 6.5 45.7% feature · violin
Cluster 9 10 NV2.11732 10.80 6.2 42.9% feature · violin
Cluster 9 11 NV2.18830 3.28 6.1 54.3% feature · violin
Cluster 9 12 NV2.4247 7.92 5.9 41.4% feature · violin
Cluster 9 13 NV2.740 6.47 5.6 40.0% feature · violin
Cluster 9 14 NV2.15147 7.00 5.5 38.6% feature · violin
Cluster 9 15 NV2.6060 7.29 5.3 37.1% feature · violin
TOP