Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.1174 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 13 1 XP_032219880.1 (NV2.2930) 5.83 17.4 69.3% feature · violin
Cluster 13 2 NV2.19908 not mapped 3.18 12.3 60.6% feature · violin
Cluster 13 3 XP_032219419.2 (NV2.8437) 5.73 12.2 48.5% feature · violin
Cluster 13 4 XP_032238357.2 (NV2.20203) 0.95 12.0 97.9% feature · violin
Cluster 13 5 XP_032223656.1 (NV2.16324) 4.54 11.6 50.2% feature · violin
Cluster 13 6 NV2.18830 not mapped 3.43 11.5 54.4% feature · violin
Cluster 13 7 XP_032232817.1 (NV2.4239) 2.40 11.3 66.0% feature · violin
Cluster 13 8 NV2.19306 not mapped 1.49 11.1 88.0% feature · violin
Cluster 13 9 NV2.17885 not mapped 5.59 10.7 41.9% feature · violin
Cluster 13 10 NV2.20515 not mapped 2.55 10.3 58.1% feature · violin
Cluster 13 11 XP_001630992.3 (NV2.17450) 6.22 10.2 39.4% feature · violin
Cluster 13 12 NV2.24576 not mapped 2.31 10.1 61.8% feature · violin
Cluster 13 13 XP_001635389.2 (NV2.25004) 2.73 9.9 51.5% feature · violin
Cluster 13 14 NV2.8699 not mapped 2.19 9.7 61.0% feature · violin
Cluster 13 15 XP_032228508.2 (NV2.12829) 2.49 9.7 54.4% feature · violin
Cluster 13 16 NV2.2381 not mapped 6.25 9.6 37.3% feature · violin
Cluster 13 17 XP_032217735.1 (NV2.1174) 1.89 9.4 65.6% feature · violin
Cluster 13 18 NV2.14741 not mapped 2.44 9.2 51.0% feature · violin
Cluster 13 19 NV2.6676 not mapped 2.33 9.1 52.3% feature · violin
Cluster 13 20 XP_032223562.2 (NV2.14808) 2.30 8.9 53.9% feature · violin
Cluster 13 21 NV2.19307 not mapped 2.45 8.9 50.2% feature · violin
Cluster 13 22 XP_001641078.1 (NV2.11812) 2.34 8.9 51.0% feature · violin
Cluster 13 23 XP_032239608.1 (NV2.23250) 1.55 8.8 70.5% feature · violin
Cluster 13 24 NV2.17305 not mapped 4.30 8.8 37.3% feature · violin
Cluster 13 25 XP_048587084.1 (NV2.25005) 2.19 8.8 53.1% feature · violin
Cluster 13 26 XP_001625396.1 (NV2.24797) 1.57 8.7 71.8% feature · violin
Cluster 13 27 XP_001637641.2 (NV2.23310) 1.25 8.6 81.7% feature · violin
Cluster 13 28 NV2.1727 not mapped 2.20 8.2 48.1% feature · violin
Cluster 13 29 XP_032222827.1 (NV2.12250) 4.42 8.1 33.2% feature · violin
Cluster 13 30 XP_048575348.1 (NV2.7434) 6.33 8.0 30.7% feature · violin
Cluster 13 31 NV2.4446 not mapped 2.11 8.0 49.8% feature · violin
Cluster 13 32 XP_048582195.1 (NV2.16715) 2.10 7.9 49.4% feature · violin
Cluster 13 33 XP_001632669.1 (NV2.2003) 2.07 7.8 47.3% feature · violin
Cluster 13 34 XP_001630142.2 (NV2.7915) 1.81 7.7 55.2% feature · violin
Cluster 13 35 XP_001640903.2 (NV2.1654) 1.55 7.6 66.4% feature · violin
Cluster 13 36 XP_032240716.2 (NV2.19049) 5.89 7.6 29.5% feature · violin
Cluster 13 37 XP_032229155.2 (NV2.22260) 1.88 7.6 49.8% feature · violin
Cluster 13 38 XP_032223693.1 (NV2.805) 1.92 7.5 50.6% feature · violin
Cluster 13 39 XP_001638572.2 (NV2.6121) 2.55 7.5 39.0% feature · violin
Cluster 13 40 XP_048590136.1 (NV2.6430) 2.13 7.5 44.0% feature · violin
Cluster 13 41 XP_032231412.1 (NV2.4812) 2.76 7.4 36.5% feature · violin
Cluster 13 42 XP_001625473.2 (NV2.12422) 2.67 7.3 36.1% feature · violin
Cluster 13 43 XP_032223270.2 (NV2.3527) 6.59 7.1 27.4% feature · violin
Cluster 13 44 XP_032229515.2 (NV2.11161) 2.06 7.1 42.7% feature · violin
Cluster 13 45 XP_048583331.1 (NV2.22890) 2.49 7.0 36.1% feature · violin
Cluster 13 46 XP_048588489.1 (NV2.21858) 1.98 6.9 42.7% feature · violin
Cluster 13 47 XP_001637285.1 (NV2.22408) 1.28 6.9 62.7% feature · violin
Cluster 13 48 NV2.13027 not mapped 1.43 6.9 63.5% feature · violin
Cluster 13 49 NV2.4071 not mapped 1.91 6.9 44.0% feature · violin
Cluster 13 50 XP_048589952.1 (NV2.6280) 2.17 6.9 39.4% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 16 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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