Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.14111 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 18 1 NV2.156 not mapped 10.74 9.1 93.8% feature · violin
Cluster 18 2 XP_001630583.1 (NV2.7661) 4.27 8.6 96.9% feature · violin
Cluster 18 3 NV2.2881 not mapped 3.77 8.4 96.9% feature · violin
Cluster 18 4 XP_001630069.1 (NV2.8119) 4.35 7.3 93.8% feature · violin
Cluster 18 5 XP_032219263.2 (NV2.14540) 10.09 7.0 71.9% feature · violin
Cluster 18 6 NV2.6264 not mapped 2.88 6.8 96.9% feature · violin
Cluster 18 7 XP_001635435.2 (NV2.25312) 3.97 6.1 75.0% feature · violin
Cluster 18 8 XP_032238357.2 (NV2.20203) 1.02 5.6 93.8% feature · violin
Cluster 18 9 XP_001628178.2 (NV2.17049) 3.57 5.6 71.9% feature · violin
Cluster 18 10 XP_001638232.1 (NV2.10670) 5.39 5.2 56.2% feature · violin
Cluster 18 11 XP_001628652.2 (NV2.5353) 3.21 5.1 75.0% feature · violin
Cluster 18 12 NV2.1062 not mapped 2.05 5.1 96.9% feature · violin
Cluster 18 13 XP_032226690.1 (NV2.8516) 4.42 4.9 56.2% feature · violin
Cluster 18 14 NV2.12194 not mapped 7.22 4.8 50.0% feature · violin
Cluster 18 15 NV2.17078 not mapped 2.69 4.7 71.9% feature · violin
Cluster 18 16 XP_001638395.1 (NV2.6171) 4.98 4.6 50.0% feature · violin
Cluster 18 17 NV2.8367 not mapped 3.70 4.4 53.1% feature · violin
Cluster 18 18 XP_001640937.1 (NV2.11863) 3.10 4.2 56.2% feature · violin
Cluster 18 19 XP_001629337.2 (NV2.12590) 3.48 4.2 53.1% feature · violin
Cluster 18 20 NV2.2594 not mapped 5.43 4.1 43.8% feature · violin
Cluster 18 21 XP_001627474.1 (NV2.21476) 3.53 4.1 50.0% feature · violin
Cluster 18 22 NV2.1066 not mapped 2.56 3.9 59.4% feature · violin
Cluster 18 23 XP_001636830.1 (NV2.11586) 2.72 3.9 56.2% feature · violin
Cluster 18 24 XP_001633337.1 (NV2.20247) 1.77 3.9 84.4% feature · violin
Cluster 18 25 XP_001633937.2 (NV2.16205) 2.80 3.8 62.5% feature · violin
Cluster 18 26 XP_001622321.3 (NV2.6330) 9.85 3.7 37.5% feature · violin
Cluster 18 27 XP_032235860.1 (NV2.19883) 8.80 3.7 37.5% feature · violin
Cluster 18 28 XP_032223550.2 (NV2.10008) 8.55 3.7 37.5% feature · violin
Cluster 18 29 XP_032220197.1 (NV2.5258) 4.27 3.6 40.6% feature · violin
Cluster 18 30 XP_001623059.2 (NV2.7307) 3.78 3.5 40.6% feature · violin
Cluster 18 31 XP_001636897.2 (NV2.8037) 3.61 3.4 40.6% feature · violin
Cluster 18 32 XP_001622502.3 (NV2.25537) 4.47 3.4 37.5% feature · violin
Cluster 18 33 NV2.1448 not mapped 4.44 3.4 37.5% feature · violin
Cluster 18 34 XP_032237828.1 (NV2.2701) 4.30 3.3 37.5% feature · violin
Cluster 18 35 XP_001631344.2 (NV2.15805) 2.79 3.3 43.8% feature · violin
Cluster 18 36 XP_001629183.3 (NV2.18367) 2.75 3.2 43.8% feature · violin
Cluster 18 37 NV2.3282 not mapped 3.03 3.2 40.6% feature · violin
Cluster 18 38 XP_048577854.1 (NV2.8804) 2.09 3.2 56.2% feature · violin
Cluster 18 39 XP_001642071.2 (NV2.14721) 2.10 3.1 50.0% feature · violin
Cluster 18 40 XP_032226983.1 (NV2.9631) 1.75 3.0 62.5% feature · violin
Cluster 18 41 XP_048583468.1 (NV2.23527) 2.89 3.0 37.5% feature · violin
Cluster 18 42 NV2.17214 not mapped 5.20 2.9 31.2% feature · violin
Cluster 18 43 XP_001632476.2 (NV2.14111) 5.06 2.9 31.2% feature · violin
Cluster 18 44 NV2.25140 not mapped 2.84 2.9 37.5% feature · violin
Cluster 18 45 XP_001639131.1 (NV2.2866) 1.39 2.8 100.0% feature · violin
Cluster 18 46 XP_048580148.1 (NV2.11736) 1.68 2.8 59.4% feature · violin
Cluster 18 47 XP_001623639.1 (NV2.5541) 0.91 2.8 100.0% feature · violin
Cluster 18 48 XP_032236198.1 (NV2.15905) 2.60 2.8 37.5% feature · violin
Cluster 18 49 XP_032231043.1 (NV2.18989) 2.21 2.8 43.8% feature · violin
Cluster 18 50 NV2.6248 not mapped 2.76 2.6 34.4% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 14 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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