Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.15964 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 15 1 NV2.3425 not mapped 7.47 11.3 97.8% feature · violin
Cluster 15 2 XP_032236645.1 (NV2.6785) 7.47 9.7 84.8% feature · violin
Cluster 15 3 NV2.12904 not mapped 7.32 9.4 82.6% feature · violin
Cluster 15 4 XP_032242610.1 (NV2.11564) 6.97 9.4 82.6% feature · violin
Cluster 15 5 XP_048579463.1 (NV2.12902) 9.02 8.8 76.1% feature · violin
Cluster 15 6 NV2.21610 not mapped 7.89 8.5 73.9% feature · violin
Cluster 15 7 NV2.12903 not mapped 8.32 8.0 69.6% feature · violin
Cluster 15 8 XP_048580776.1 (NV2.14921) 5.54 7.5 69.6% feature · violin
Cluster 15 9 NV2.1249 not mapped 2.78 7.0 95.7% feature · violin
Cluster 15 10 XP_032238014.2 (NV2.21677) 6.03 6.9 63.0% feature · violin
Cluster 15 11 XP_001632985.2 (NV2.21678) 5.68 6.7 60.9% feature · violin
Cluster 15 12 XP_032238357.2 (NV2.20203) 1.06 5.8 100.0% feature · violin
Cluster 15 13 NV2.10277 not mapped 2.33 5.8 87.0% feature · violin
Cluster 15 14 NV2.19057 not mapped 6.74 5.7 50.0% feature · violin
Cluster 15 15 XP_001626294.2 (NV2.6419) 1.55 5.3 100.0% feature · violin
Cluster 15 16 NV2.13030 not mapped 1.12 5.3 100.0% feature · violin
Cluster 15 17 NV2.15977 not mapped 2.11 4.9 71.7% feature · violin
Cluster 15 18 NV2.13027 not mapped 1.99 4.3 69.6% feature · violin
Cluster 15 19 XP_048577184.1 (NV2.4529) 4.48 4.2 39.1% feature · violin
Cluster 15 20 NV2.5899 not mapped 1.13 4.2 91.3% feature · violin
Cluster 15 21 NV2.25910 not mapped 3.09 4.1 43.5% feature · violin
Cluster 15 22 NV2.7223 not mapped 1.08 4.0 95.7% feature · violin
Cluster 15 23 XP_001629285.1 (NV2.23520) 1.98 4.0 63.0% feature · violin
Cluster 15 24 XP_001638395.1 (NV2.6171) 4.17 3.9 37.0% feature · violin
Cluster 15 25 XP_001635775.2 (NV2.9784) 2.16 3.9 54.3% feature · violin
Cluster 15 26 NV2.12439 not mapped 1.55 3.6 69.6% feature · violin
Cluster 15 27 XP_048587058.1 (NV2.25146) 6.79 3.5 30.4% feature · violin
Cluster 15 28 XP_001634593.1 (NV2.1870) 3.30 3.4 34.8% feature · violin
Cluster 15 29 XP_032237946.2 (NV2.13531) 1.39 3.4 82.6% feature · violin
Cluster 15 30 XP_001640117.2 (NV2.6876) 1.01 3.4 91.3% feature · violin
Cluster 15 31 XP_001629735.1 (NV2.17224) 1.76 3.2 52.2% feature · violin
Cluster 15 32 XP_001629439.3 (NV2.15964) 3.82 3.2 30.4% feature · violin
Cluster 15 33 NV2.21823 not mapped 1.11 3.1 80.4% feature · violin
Cluster 15 34 XP_001630477.1 (NV2.9614) 0.99 3.1 97.8% feature · violin
Cluster 15 35 XP_001629910.2 (NV2.15104) 4.66 3.1 28.3% feature · violin
Cluster 15 36 XP_048589872.1 (NV2.10942) 1.19 3.1 80.4% feature · violin
Cluster 15 37 NV2.14919 not mapped 5.81 3.0 26.1% feature · violin
Cluster 15 38 NV2.3291 not mapped 1.11 3.0 84.8% feature · violin
Cluster 15 39 NV2.3711 not mapped 1.19 3.0 73.9% feature · violin
Cluster 15 40 XP_001636296.1 (NV2.25450) 1.47 2.9 54.3% feature · violin
Cluster 15 41 XP_001632669.1 (NV2.2003) 1.92 2.9 41.3% feature · violin
Cluster 15 42 XP_001640566.1 (NV2.20473) 0.74 2.9 89.1% feature · violin
Cluster 15 43 XP_001631282.1 (NV2.4738) 1.02 2.8 95.7% feature · violin
Cluster 15 44 XP_032229634.2 (NV2.22761) 1.19 2.8 69.6% feature · violin
Cluster 15 45 XP_001637624.1 (NV2.23347) 4.10 2.8 26.1% feature · violin
Cluster 15 46 NV2.20396 not mapped 2.18 2.8 34.8% feature · violin
Cluster 15 47 XP_001640452.1 (NV2.7107) 0.77 2.6 100.0% feature · violin
Cluster 15 48 NV2.25931 not mapped 0.63 2.6 93.5% feature · violin
Cluster 15 49 NV2.3427 not mapped 3.95 2.6 23.9% feature · violin
Cluster 15 50 XP_001631646.1 (NV2.13986) 1.25 2.6 63.0% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 21 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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