Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.17682 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 12 1 XP_048585753.1 (NV2.19485) 8.67 12.6 95.0% feature · violin
Cluster 12 2 NV2.5358 not mapped 7.97 12.5 96.7% feature · violin
Cluster 12 3 XP_001631794.2 (NV2.10038) 8.17 12.1 91.7% feature · violin
Cluster 12 4 NV2.25851 not mapped 8.27 11.4 86.7% feature · violin
Cluster 12 5 XP_048584535.1 (NV2.17429) 8.32 11.2 85.0% feature · violin
Cluster 12 6 XP_048580776.1 (NV2.14921) 6.68 10.5 81.7% feature · violin
Cluster 12 7 XP_048589136.1 (NV2.2666) 7.28 10.0 76.7% feature · violin
Cluster 12 8 XP_001638930.3 (NV2.740) 7.02 8.1 61.7% feature · violin
Cluster 12 9 NV2.10279 not mapped 9.25 7.8 58.3% feature · violin
Cluster 12 10 XP_048584536.1 (NV2.25847) 8.54 7.7 58.3% feature · violin
Cluster 12 11 XP_032238014.2 (NV2.21677) 5.25 7.6 61.7% feature · violin
Cluster 12 12 XP_048584945.1 (NV2.17605) 5.79 6.6 51.7% feature · violin
Cluster 12 13 NV2.2655 not mapped 3.33 6.3 60.0% feature · violin
Cluster 12 14 NV2.10281 not mapped 7.32 6.2 46.7% feature · violin
Cluster 12 15 XP_001632985.2 (NV2.21678) 4.90 6.2 50.0% feature · violin
Cluster 12 16 XP_001635775.2 (NV2.9784) 2.69 6.1 66.7% feature · violin
Cluster 12 17 XP_001640117.2 (NV2.6876) 1.37 5.7 93.3% feature · violin
Cluster 12 18 NV2.15977 not mapped 2.15 5.6 78.3% feature · violin
Cluster 12 19 NV2.10277 not mapped 1.95 5.2 86.7% feature · violin
Cluster 12 20 NV2.9156 not mapped 4.55 5.0 40.0% feature · violin
Cluster 12 21 NV2.3425 not mapped 2.23 4.9 68.3% feature · violin
Cluster 12 22 XP_001639141.2 (NV2.2894) 2.47 4.9 53.3% feature · violin
Cluster 12 23 XP_001629285.1 (NV2.23520) 2.05 4.9 66.7% feature · violin
Cluster 12 24 NV2.14919 not mapped 6.68 4.8 36.7% feature · violin
Cluster 12 25 XP_032239366.1 (NV2.13311) 1.12 4.8 98.3% feature · violin
Cluster 12 26 XP_001626598.1 (NV2.10) 1.95 4.8 71.7% feature · violin
Cluster 12 27 XP_001625494.1 (NV2.23809) 1.97 4.7 66.7% feature · violin
Cluster 12 28 NV2.7716 not mapped 2.06 4.7 63.3% feature · violin
Cluster 12 29 NV2.21823 not mapped 1.50 4.7 88.3% feature · violin
Cluster 12 30 XP_001630477.1 (NV2.9614) 1.11 4.6 96.7% feature · violin
Cluster 12 31 XP_001628997.1 (NV2.24396) 1.78 4.5 75.0% feature · violin
Cluster 12 32 XP_001627013.1 (NV2.4389) 1.84 4.4 70.0% feature · violin
Cluster 12 33 XP_048589003.1 (NV2.21794) 1.56 4.4 90.0% feature · violin
Cluster 12 34 XP_001626706.1 (NV2.23687) 1.14 4.3 91.7% feature · violin
Cluster 12 35 XP_001627740.1 (NV2.22180) 1.12 4.2 100.0% feature · violin
Cluster 12 36 NV2.18830 not mapped 2.13 4.2 48.3% feature · violin
Cluster 12 37 XP_048582403.1 (NV2.17125) 1.27 4.2 95.0% feature · violin
Cluster 12 38 NV2.12028 not mapped 1.56 4.1 78.3% feature · violin
Cluster 12 39 XP_032218678.1 (NV2.22034) 1.19 4.0 98.3% feature · violin
Cluster 12 40 XP_048585754.1 (NV2.19486) 7.94 4.0 30.0% feature · violin
Cluster 12 41 XP_001630483.1 (NV2.6651) 1.12 4.0 95.0% feature · violin
Cluster 12 42 NV2.7223 not mapped 0.84 4.0 91.7% feature · violin
Cluster 12 43 NV2.3291 not mapped 1.32 3.9 90.0% feature · violin
Cluster 12 44 NV2.13027 not mapped 1.61 3.9 66.7% feature · violin
Cluster 12 45 XP_001641455.1 (NV2.12154) 1.36 3.9 86.7% feature · violin
Cluster 12 46 XP_001630296.1 (NV2.196) 1.01 3.9 90.0% feature · violin
Cluster 12 47 XP_001636562.2 (NV2.3804) 1.68 3.8 60.0% feature · violin
Cluster 12 48 NV2.17682 not mapped 1.66 3.8 60.0% feature · violin
Cluster 12 49 NV2.5899 not mapped 0.84 3.8 88.3% feature · violin
Cluster 12 50 NV2.17759 not mapped 1.18 3.6 95.0% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 20 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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