Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.17740 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 3 1 XP_048588459.1 (NV2.1969) 2.61 11.6 58.1% feature · violin
Cluster 3 2 NV2.1062 not mapped 1.18 8.9 86.3% feature · violin
Cluster 3 3 XP_032240507.2 (NV2.18168) 2.04 8.6 47.3% feature · violin
Cluster 3 4 XP_032223693.1 (NV2.805) 1.87 8.2 48.6% feature · violin
Cluster 3 5 XP_032234576.2 (NV2.20761) 1.47 8.1 62.3% feature · violin
Cluster 3 6 NV2.23463 not mapped 1.95 7.5 41.9% feature · violin
Cluster 3 7 NV2.24576 not mapped 1.57 7.3 48.9% feature · violin
Cluster 3 8 XP_001632907.2 (NV2.13538) 2.00 7.2 37.7% feature · violin
Cluster 3 9 NV2.2719 not mapped 4.94 7.1 24.9% feature · violin
Cluster 3 10 NV2.25738 not mapped 2.77 7.0 29.7% feature · violin
Cluster 3 11 XP_032231412.1 (NV2.4812) 2.49 7.0 31.9% feature · violin
Cluster 3 12 XP_001630142.2 (NV2.7915) 1.44 6.8 49.8% feature · violin
Cluster 3 13 NV2.20765 not mapped 1.57 6.7 44.4% feature · violin
Cluster 3 14 NV2.9961 not mapped 5.73 6.7 23.0% feature · violin
Cluster 3 15 NV2.18830 not mapped 2.04 6.6 34.2% feature · violin
Cluster 3 16 XP_001636551.2 (NV2.3783) 2.09 6.6 32.6% feature · violin
Cluster 3 17 NV2.19307 not mapped 1.73 6.3 37.4% feature · violin
Cluster 3 18 XP_032226623.1 (NV2.16792) 1.89 6.3 33.9% feature · violin
Cluster 3 19 XP_032223656.1 (NV2.16324) 2.57 6.2 29.1% feature · violin
Cluster 3 20 XP_001633226.2 (NV2.16897) 2.71 6.1 25.6% feature · violin
Cluster 3 21 XP_001630069.1 (NV2.8119) 1.19 6.1 58.5% feature · violin
Cluster 3 22 XP_032223176.1 (NV2.3509) 4.60 6.0 21.7% feature · violin
Cluster 3 23 XP_001640448.1 (NV2.7089) 3.80 6.0 22.0% feature · violin
Cluster 3 24 NV2.17838 not mapped 3.92 5.9 22.0% feature · violin
Cluster 3 25 XP_032220141.1 (NV2.25136) 3.78 5.9 22.0% feature · violin
Cluster 3 26 XP_032219880.1 (NV2.2930) 2.53 5.8 25.2% feature · violin
Cluster 3 27 NV2.23778 not mapped 1.21 5.8 47.9% feature · violin
Cluster 3 28 XP_048585616.1 (NV2.17740) 3.51 5.7 21.4% feature · violin
Cluster 3 29 XP_048580821.1 (NV2.252) 3.83 5.6 20.8% feature · violin
Cluster 3 30 XP_032238357.2 (NV2.20203) 0.42 5.5 97.8% feature · violin
Cluster 3 31 NV2.3318 not mapped 4.83 5.4 19.2% feature · violin
Cluster 3 32 XP_001641534.3 (NV2.12087) 1.32 5.4 47.6% feature · violin
Cluster 3 33 XP_048587879.1 (NV2.2044) 1.79 5.4 28.8% feature · violin
Cluster 3 34 XP_001634797.3 (NV2.17595) 1.83 5.4 28.4% feature · violin
Cluster 3 35 XP_001630598.2 (NV2.7700) 0.92 5.4 62.9% feature · violin
Cluster 3 36 NV2.6151 not mapped 1.30 5.2 38.0% feature · violin
Cluster 3 37 XP_048587084.1 (NV2.25005) 1.24 5.1 39.6% feature · violin
Cluster 3 38 XP_001632669.1 (NV2.2003) 1.39 5.0 33.9% feature · violin
Cluster 3 39 NV2.1066 not mapped 1.26 4.9 35.8% feature · violin
Cluster 3 40 XP_048582100.1 (NV2.15632) 1.09 4.7 40.3% feature · violin
Cluster 3 41 XP_001641693.2 (NV2.3337) 1.47 4.7 30.7% feature · violin
Cluster 3 42 NV2.13751 not mapped 2.58 4.7 19.5% feature · violin
Cluster 3 43 NV2.19306 not mapped 0.58 4.7 78.3% feature · violin
Cluster 3 44 XP_048577184.1 (NV2.4529) 3.28 4.6 17.9% feature · violin
Cluster 3 45 NV2.10394 not mapped 4.13 4.6 17.3% feature · violin
Cluster 3 46 NV2.13027 not mapped 0.91 4.6 54.0% feature · violin
Cluster 3 47 XP_048576888.1 (NV2.4259) 0.94 4.5 44.7% feature · violin
Cluster 3 48 NV2.1063 not mapped 1.03 4.5 41.9% feature · violin
Cluster 3 49 NV2.25322 not mapped 3.33 4.5 17.3% feature · violin
Cluster 3 50 XP_032241570.2 (NV2.1445) 2.97 4.4 19.8% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 20 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

TOP