Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.23615 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 14 1 XP_048582073.1 (NV2.15362) 9.47 10.8 74.0% feature · violin
Cluster 14 2 NV2.4019 not mapped 7.84 10.7 74.0% feature · violin
Cluster 14 3 XP_048584859.1 (NV2.17494) 9.21 10.6 72.6% feature · violin
Cluster 14 4 XP_048586062.1 (NV2.20054) 2.44 5.7 60.3% feature · violin
Cluster 14 5 XP_032229634.2 (NV2.22761) 2.03 5.4 71.2% feature · violin
Cluster 14 6 XP_001641534.3 (NV2.12087) 2.38 5.4 61.6% feature · violin
Cluster 14 7 XP_001637998.2 (NV2.4590) 5.34 5.2 37.0% feature · violin
Cluster 14 8 NV2.13562 not mapped 4.04 4.9 37.0% feature · violin
Cluster 14 9 XP_001640903.2 (NV2.1654) 1.73 4.8 67.1% feature · violin
Cluster 14 10 XP_001629343.2 (NV2.12640) 1.16 4.7 86.3% feature · violin
Cluster 14 11 NV2.19306 not mapped 1.13 4.7 83.6% feature · violin
Cluster 14 12 XP_032228508.2 (NV2.12829) 2.16 4.7 50.7% feature · violin
Cluster 14 13 XP_001631593.2 (NV2.23891) 1.89 4.6 56.2% feature · violin
Cluster 14 14 XP_001630142.2 (NV2.7915) 2.02 4.6 57.5% feature · violin
Cluster 14 15 NV2.24576 not mapped 1.98 4.6 54.8% feature · violin
Cluster 14 16 XP_001630598.2 (NV2.7700) 1.36 4.4 69.9% feature · violin
Cluster 14 17 XP_001640689.1 (NV2.20404) 1.23 4.4 83.6% feature · violin
Cluster 14 18 NV2.1062 not mapped 1.23 4.3 83.6% feature · violin
Cluster 14 19 XP_032234576.2 (NV2.20761) 1.63 4.3 65.8% feature · violin
Cluster 14 20 XP_001629744.1 (NV2.17242) 2.35 4.2 41.1% feature · violin
Cluster 14 21 XP_001625396.1 (NV2.24797) 1.29 4.2 65.8% feature · violin
Cluster 14 22 XP_032226623.1 (NV2.16792) 2.39 4.2 41.1% feature · violin
Cluster 14 23 NV2.2713 not mapped 1.19 4.2 86.3% feature · violin
Cluster 14 24 XP_032226344.1 (NV2.18275) 5.91 4.1 28.8% feature · violin
Cluster 14 25 XP_048580223.1 (NV2.11276) 4.75 4.0 28.8% feature · violin
Cluster 14 26 NV2.23463 not mapped 2.03 4.0 43.8% feature · violin
Cluster 14 27 XP_001640236.3 (NV2.1024) 1.39 4.0 56.2% feature · violin
Cluster 14 28 NV2.15541 not mapped 1.06 3.9 89.0% feature · violin
Cluster 14 29 XP_032232433.1 (NV2.21636) 8.23 3.8 26.0% feature · violin
Cluster 14 30 XP_048585373.1 (NV2.17727) 2.11 3.8 39.7% feature · violin
Cluster 14 31 XP_001630069.1 (NV2.8119) 1.44 3.8 60.3% feature · violin
Cluster 14 32 XP_001633323.2 (NV2.20205) 1.15 3.7 69.9% feature · violin
Cluster 14 33 XP_001627362.1 (NV2.17098) 1.96 3.7 41.1% feature · violin
Cluster 14 34 NV2.1727 not mapped 1.86 3.7 42.5% feature · violin
Cluster 14 35 NV2.20765 not mapped 1.74 3.6 45.2% feature · violin
Cluster 14 36 XP_032217735.1 (NV2.1174) 1.34 3.6 63.0% feature · violin
Cluster 14 37 NV2.1066 not mapped 1.82 3.6 42.5% feature · violin
Cluster 14 38 XP_032219982.2 (NV2.3019) 1.84 3.6 41.1% feature · violin
Cluster 14 39 NV2.8891 not mapped 1.80 3.5 42.5% feature · violin
Cluster 14 40 NV2.19307 not mapped 1.91 3.5 39.7% feature · violin
Cluster 14 41 XP_001637756.2 (NV2.24122) 1.63 3.5 43.8% feature · violin
Cluster 14 42 XP_001639806.1 (NV2.23603) 1.91 3.4 38.4% feature · violin
Cluster 14 43 NV2.14416 not mapped 6.58 3.4 23.3% feature · violin
Cluster 14 44 XP_001636593.2 (NV2.16121) 1.34 3.3 53.4% feature · violin
Cluster 14 45 XP_048589696.1 (NV2.3882) 1.69 3.3 41.1% feature · violin
Cluster 14 46 XP_001633337.1 (NV2.20247) 1.04 3.3 64.4% feature · violin
Cluster 14 47 XP_001639622.1 (NV2.16462) 2.11 3.3 34.2% feature · violin
Cluster 14 48 XP_001639719.1 (NV2.23615) 2.30 3.3 34.2% feature · violin
Cluster 14 49 XP_001641693.2 (NV2.3337) 1.98 3.3 37.0% feature · violin
Cluster 14 50 NV2.4122 not mapped 2.40 3.3 30.1% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 15 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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