Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.24065 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 16 1 XP_001637691.2 (NV2.23363) 9.38 10.3 61.5% feature · violin
Cluster 16 2 XP_048579808.1 (NV2.11082) 9.35 8.7 52.1% feature · violin
Cluster 16 3 XP_048584605.1 (NV2.18817) 2.05 5.8 79.2% feature · violin
Cluster 16 4 NV2.3425 not mapped 1.99 5.4 58.3% feature · violin
Cluster 16 5 NV2.11816 not mapped 1.82 5.0 75.0% feature · violin
Cluster 16 6 XP_001622874.2 (NV2.19607) 1.40 4.9 78.1% feature · violin
Cluster 16 7 XP_001630069.1 (NV2.8119) 1.63 4.8 68.8% feature · violin
Cluster 16 8 NV2.3269 not mapped 5.36 4.7 29.2% feature · violin
Cluster 16 9 XP_001630583.1 (NV2.7661) 1.31 4.6 84.4% feature · violin
Cluster 16 10 NV2.19682 not mapped 0.67 4.1 96.9% feature · violin
Cluster 16 11 NV2.11721 not mapped 1.38 4.1 63.5% feature · violin
Cluster 16 12 XP_001633083.2 (NV2.13683) 1.55 4.0 72.9% feature · violin
Cluster 16 13 XP_032241570.2 (NV2.1445) 2.85 3.6 27.1% feature · violin
Cluster 16 14 XP_048587873.1 (NV2.2165) 0.87 3.1 61.5% feature · violin
Cluster 16 15 XP_032218917.1 (NV2.10686) 1.11 3.0 60.4% feature · violin
Cluster 16 16 NV2.11815 not mapped 1.18 2.9 47.9% feature · violin
Cluster 16 17 NV2.6264 not mapped 0.80 2.9 80.2% feature · violin
Cluster 16 18 XP_001625867.1 (NV2.6537) 0.82 2.9 70.8% feature · violin
Cluster 16 19 NV2.2881 not mapped 0.71 2.9 76.0% feature · violin
Cluster 16 20 XP_001624357.2 (NV2.19701) 0.85 2.9 68.8% feature · violin
Cluster 16 21 XP_001625938.2 (NV2.12945) 0.78 2.6 82.3% feature · violin
Cluster 16 22 XP_001631528.1 (NV2.1709) 0.68 2.6 63.5% feature · violin
Cluster 16 23 XP_032229634.2 (NV2.22761) 0.82 2.6 64.6% feature · violin
Cluster 16 24 XP_032226775.1 (NV2.24065) 5.90 2.6 15.6% feature · violin
Cluster 16 25 XP_032238357.2 (NV2.20203) 0.41 2.5 100.0% feature · violin
Cluster 16 26 NV2.8789 not mapped 2.91 2.5 17.7% feature · violin
Cluster 16 27 XP_001641112.2 (NV2.11720) 1.04 2.4 38.5% feature · violin
Cluster 16 28 XP_001633337.1 (NV2.20247) 0.61 2.4 66.7% feature · violin
Cluster 16 29 NV2.8570 not mapped 0.51 2.3 100.0% feature · violin
Cluster 16 30 XP_032217946.2 (NV2.23410) 0.69 2.3 51.0% feature · violin
Cluster 16 31 XP_048576925.1 (NV2.11818) 1.03 2.3 36.5% feature · violin
Cluster 16 32 XP_032220171.1 (NV2.5200) 0.89 2.3 41.7% feature · violin
Cluster 16 33 NV2.23463 not mapped 1.20 2.3 30.2% feature · violin
Cluster 16 34 NV2.11802 not mapped 0.85 2.1 41.7% feature · violin
Cluster 16 35 XP_001624324.2 (NV2.22011) 0.65 2.1 60.4% feature · violin
Cluster 16 36 XP_001631045.1 (NV2.2816) 0.58 2.1 88.5% feature · violin
Cluster 16 37 XP_032222173.2 (NV2.11723) 0.88 2.1 37.5% feature · violin
Cluster 16 38 NV2.11819 not mapped 1.13 2.1 28.1% feature · violin
Cluster 16 39 NV2.18830 not mapped 1.21 2.0 25.0% feature · violin
Cluster 16 40 NV2.24308 not mapped 1.37 2.0 21.9% feature · violin
Cluster 16 41 NV2.13751 not mapped 2.12 1.9 15.6% feature · violin
Cluster 16 42 NV2.19627 not mapped 0.80 1.9 36.5% feature · violin
Cluster 16 43 NV2.19306 not mapped 0.41 1.9 80.2% feature · violin
Cluster 16 44 NV2.4072 not mapped 0.81 1.8 34.4% feature · violin
Cluster 16 45 NV2.17838 not mapped 2.27 1.8 13.5% feature · violin
Cluster 16 46 XP_048583142.1 (NV2.2225) 1.70 1.8 16.7% feature · violin
Cluster 16 47 XP_048586224.1 (NV2.20524) 5.99 1.7 10.4% feature · violin
Cluster 16 48 NV2.50 not mapped 0.73 1.7 30.2% feature · violin
Cluster 16 49 NV2.1851 not mapped 0.81 1.6 30.2% feature · violin
Cluster 16 50 XP_032240507.2 (NV2.18168) 0.79 1.6 32.3% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 22 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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