Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.2748 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 17 1 XP_032233466.1 (NV2.12623) 7.68 10.5 97.6% feature · violin
Cluster 17 2 XP_032233464.1 (NV2.12621) 7.15 9.6 90.2% feature · violin
Cluster 17 3 XP_032218917.1 (NV2.10686) 4.98 9.3 97.6% feature · violin
Cluster 17 4 XP_048578999.1 (NV2.10343) 7.60 9.2 85.4% feature · violin
Cluster 17 5 XP_001638827.2 (NV2.20021) 7.04 8.9 82.9% feature · violin
Cluster 17 6 NV2.6716 not mapped 8.95 8.8 80.5% feature · violin
Cluster 17 7 XP_048586136.1 (NV2.20489) 7.29 8.4 78.0% feature · violin
Cluster 17 8 XP_048578523.1 (NV2.9746) 5.82 8.4 82.9% feature · violin
Cluster 17 9 XP_048576883.1 (NV2.11801) 6.85 8.3 78.0% feature · violin
Cluster 17 10 NV2.11815 not mapped 5.24 8.1 85.4% feature · violin
Cluster 17 11 XP_048578736.1 (NV2.9990) 6.09 7.2 68.3% feature · violin
Cluster 17 12 XP_048576923.1 (NV2.11814) 5.34 7.0 68.3% feature · violin
Cluster 17 13 NV2.25695 not mapped 6.36 6.7 63.4% feature · violin
Cluster 17 14 XP_001639561.1 (NV2.16606) 4.51 6.5 65.9% feature · violin
Cluster 17 15 XP_001626714.2 (NV2.23668) 4.32 6.3 65.9% feature · violin
Cluster 17 16 XP_048578960.1 (NV2.9885) 8.02 5.9 53.7% feature · violin
Cluster 17 17 NV2.11721 not mapped 3.09 5.7 87.8% feature · violin
Cluster 17 18 XP_032226790.2 (NV2.9649) 5.76 5.7 53.7% feature · violin
Cluster 17 19 XP_032222173.2 (NV2.11723) 3.22 5.6 75.6% feature · violin
Cluster 17 20 XP_032232867.1 (NV2.4235) 7.86 5.6 51.2% feature · violin
Cluster 17 21 NV2.23597 not mapped 3.63 5.3 58.5% feature · violin
Cluster 17 22 XP_032222388.1 (NV2.11830) 3.55 5.3 58.5% feature · violin
Cluster 17 23 XP_001641112.2 (NV2.11720) 3.08 5.3 70.7% feature · violin
Cluster 17 24 XP_048578825.1 (NV2.9989) 6.02 5.2 48.8% feature · violin
Cluster 17 25 XP_032233826.2 (NV2.12690) 3.82 5.2 56.1% feature · violin
Cluster 17 26 XP_048584610.1 (NV2.17352) 5.64 5.2 48.8% feature · violin
Cluster 17 27 NV2.17392 not mapped 3.86 5.0 53.7% feature · violin
Cluster 17 28 XP_001640163.1 (NV2.975) 6.16 4.7 43.9% feature · violin
Cluster 17 29 XP_032220171.1 (NV2.5200) 2.61 4.6 70.7% feature · violin
Cluster 17 30 NV2.3291 not mapped 1.67 4.6 92.7% feature · violin
Cluster 17 31 XP_001626598.1 (NV2.10) 2.20 4.5 70.7% feature · violin
Cluster 17 32 XP_048589653.1 (NV2.2716) 2.94 4.5 53.7% feature · violin
Cluster 17 33 XP_001629285.1 (NV2.23520) 2.29 4.5 65.9% feature · violin
Cluster 17 34 XP_032222235.1 (NV2.11825) 5.83 4.4 41.5% feature · violin
Cluster 17 35 XP_001627013.1 (NV2.4389) 2.15 4.4 65.9% feature · violin
Cluster 17 36 XP_048589634.1 (NV2.2780) 6.34 4.2 39.0% feature · violin
Cluster 17 37 NV2.1066 not mapped 2.43 4.2 58.5% feature · violin
Cluster 17 38 XP_001626713.1 (NV2.23669) 1.83 4.2 78.0% feature · violin
Cluster 17 39 NV2.7716 not mapped 2.29 4.1 58.5% feature · violin
Cluster 17 40 XP_001640560.3 (NV2.20491) 3.13 4.0 51.2% feature · violin
Cluster 17 41 XP_048580248.1 (NV2.11466) 2.84 4.0 48.8% feature · violin
Cluster 17 42 XP_032222353.2 (NV2.11821) 3.09 4.0 46.3% feature · violin
Cluster 17 43 XP_001626294.2 (NV2.6419) 1.20 3.9 100.0% feature · violin
Cluster 17 44 XP_032225410.2 (NV2.23791) 6.03 3.9 36.6% feature · violin
Cluster 17 45 XP_032235903.2 (NV2.9738) 5.53 3.9 36.6% feature · violin
Cluster 17 46 XP_032238867.2 (NV2.9534) 3.12 3.9 43.9% feature · violin
Cluster 17 47 NV2.2748 not mapped 2.39 3.8 51.2% feature · violin
Cluster 17 48 NV2.1062 not mapped 1.23 3.8 85.4% feature · violin
Cluster 17 49 XP_001631646.1 (NV2.13986) 1.78 3.8 70.7% feature · violin
Cluster 17 50 XP_001640451.1 (NV2.7104) 2.88 3.8 43.9% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 11 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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